RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TAF1LQ8IZX4 1826 aa5.36□□□□□ -1.55
VPS29-212ENST00000621131 DDX60Q8IY21 1712 aaKnown RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 STMND1H3BQB6 276 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 CAMTA2O94983 1202 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 PAPSS2O95340 614 aaPredicted RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 HSPA1AP0DMV8 641 aaKnown RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 HSPA1BP0DMV9 641 aaKnown RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 PKMP14618 531 aaKnown RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 CHMLP26374 656 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 RFC4P35249 363 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 MCM2P49736 904 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 RGS19P49795 217 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 PMS2P54278 862 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 SLC15A2Q16348 729 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 HLFQ16534 295 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 DNTTIP2Q5QJE6 756 aaKnown RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 ATPAF1Q5TC12 328 aaPredicted RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 ZSCAN25Q6NSZ9 544 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 LDHAL6AQ6ZMR3 332 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 FAM83HQ6ZRV2 1179 aaPredicted RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 Q6ZSV7 163 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 Q6ZTC4 211 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 LMO3Q8TAP4 145 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 RTKNQ9BST9 563 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 KATNAL1Q9BW62 490 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 ACTR5Q9H9F9 607 aaPredicted RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 ARFGAP3Q9NP61 516 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 CHST12Q9NRB3 414 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 NARFQ9UHQ1 456 aa5.35□□□□□ -1.55
VPS29-212ENST00000621131 MYH14Q7Z406 1995 aaKnown RBP5.35□□□□□ -1.55
VPS29-212ENST00000621131 C4AP0C0L4 1744 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 ARAP2Q8WZ64 1704 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 RTL9Q8NET4 1388 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 GLUD1P00367 558 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 IFIT1P09914 478 aaKnown RBP5.34□□□□□ -1.55
VPS29-212ENST00000621131 UQCRFS1P1P0C7P4 283 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 PCP4P48539 62 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 GLUD2P49448 558 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 TBX4P57082 545 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 PFKFB4Q16877 469 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 XRRA1Q6P2D8 792 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 NFRKBQ6P4R8 1299 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 SMIM5Q71RC9 77 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 NBPF5PQ86XG9 351 aaPredicted RBP5.34□□□□□ -1.55
VPS29-212ENST00000621131 DPP10Q8N608 796 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 LRRC57Q8N9N7 239 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 SCAMP5Q8TAC9 235 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 SLC2A12Q8TD20 617 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 ADAMTS14Q8WXS8 1223 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 SNX21Q969T3 373 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 LMLNQ96KR4 655 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 ABHD16BQ9H3Z7 469 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 HERC5Q9UII4 1024 aaKnown RBP5.34□□□□□ -1.55
VPS29-212ENST00000621131 FZD10Q9ULW2 581 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 RAI2Q9Y5P3 530 aa5.34□□□□□ -1.55
VPS29-212ENST00000621131 CARMIL3Q8ND23 1372 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 UBN2Q6ZU65 1347 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 A0A1B0GUL7 405 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 HLA-DQA2P01906 255 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 ZFYP08048 801 aaPredicted RBP5.33□□□□□ -1.56
VPS29-212ENST00000621131 CYP21A2P08686 494 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 CYP2J2P51589 502 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 PNLIPRP1P54315 467 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 OAZ1P54368 228 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 CDK18Q07002 472 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 GALNT1Q10472 559 aaPredicted RBP5.33□□□□□ -1.56
VPS29-212ENST00000621131 PUM3Q15397 648 aaKnown RBP5.33□□□□□ -1.56
VPS29-212ENST00000621131 FAM171A1Q5VUB5 890 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 SUSD4Q5VX71 490 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 CWC27Q6UX04 472 aaKnown RBP5.33□□□□□ -1.56
VPS29-212ENST00000621131 ANKRD18AQ8IVF6 992 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 SLC44A2Q8IWA5 706 aaPredicted RBP5.33□□□□□ -1.56
VPS29-212ENST00000621131 ZNF527Q8NB42 609 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 BOLA2Q9H3K6 86 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 KLHL31Q9H511 634 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 CATSPERBQ9H7T0 1116 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 PRDM8Q9NQV8 689 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 PAG1Q9NWQ8 432 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 DBNLQ9UJU6 430 aaKnown RBP5.33□□□□□ -1.56
VPS29-212ENST00000621131 RCE1Q9Y256 329 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 DOCK7Q96N67 2140 aa5.33□□□□□ -1.56
VPS29-212ENST00000621131 C10orf71Q711Q0 1435 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 A0A087WV62 115 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 NPIPB13A6NJU9 1138 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 IFITM10A6NMD0 228 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 NPIPB5A8MRT5 1133 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 NPIPB4C9JG80 1138 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 MS4A18H0YCH9 400 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 ACTL6BO94805 426 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 ITGA2BP08514 1039 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 UNGP13051 313 aaPredicted RBP5.32□□□□□ -1.56
VPS29-212ENST00000621131 PTMSP20962 102 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 PSMA5P28066 241 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 SERPINB3P29508 390 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 TYK2P29597 1187 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 DSC1Q08554 894 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 ZACNQ401N2 412 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 GALNTL6Q49A17 601 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 C5orf22Q49AR2 442 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 LRRC24Q50LG9 513 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms