RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GLOD4Q9HC38 313 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 ZFYVE28Q9HCC9 887 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 DAPK2Q9UIK4 370 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 OAZ3Q9UMX2 235 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 PHF24Q9UPV7 400 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 VWA7Q9Y334 891 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 COL16A1Q07092 1604 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 IGKV6D-21A0A0A0MT36 114 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 A0A1W2PPW3 197 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 C16orf96A6NNT2 1141 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 VILLO15195 856 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 PFDN6O15212 129 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 SIX3O95343 332 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 GLDCP23378 1020 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 BNIP3Q12983 259 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 TAF12Q16514 161 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 IMPG1Q17R60 797 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 MARC1Q5VT66 337 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 UTS2BQ765I0 119 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 SPATA2LQ8IUW3 424 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 ERI1Q8IV48 349 aaKnown RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 FNDC5Q8NAU1 212 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 C19orf60Q96EN9 201 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 HBEGFQ99075 208 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 GPR22Q99680 433 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 ENTPD7Q9NQZ7 604 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 CACNA2D2Q9NY47 1150 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 ABI2Q9NYB9 513 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 HACD3Q9P035 362 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 H3BMM5 538 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 SDHDO14521 159 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 EI24O14681 340 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 ZBTB11O95625 1053 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 GLP2RO95838 553 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 CDK4P11802 303 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 LBPP18428 481 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 CDH2P19022 906 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 SLC7A1P30825 629 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 PCYT1AP49585 367 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 INHBCP55103 352 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 INHBEP58166 350 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 ATP6AP1LQ52LC2 224 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 SH3D19Q5HYK7 790 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 MRNIPQ6NTE8 343 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 ADCK1Q86TW2 530 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 RALGPS2Q86X27 583 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 CEP97Q8IW35 865 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 METTL25Q8N6Q8 603 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 VPS33AQ96AX1 596 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 TBCDQ9BTW9 1192 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 BRD8Q9H0E9 1235 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 CXCL16Q9H2A7 254 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 PLAC1Q9HBJ0 212 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 MYBPHLA2RUH7 354 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 CCDC154A6NI56 674 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 MYO1GB0I1T2 1018 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 BOLA2-SMG1P6H3BVE0 249 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 HTRA2O43464 458 aaPredicted RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 KATNA1O75449 491 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 ZNF189O75820 626 aaPredicted RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 BEST1O76090 585 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 CYP2B6P20813 491 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 PROZP22891 400 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 ADSLP30566 484 aaPredicted RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 SLC5A2P31639 672 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 MAGEA6P43360 314 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 POU4F1Q01851 419 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 CBX3Q13185 183 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 GTF2H3Q13889 308 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 TMEM26Q6ZUK4 368 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 CHSY3Q70JA7 882 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 FAM35AQ86V20 835 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 THEM5Q8N1Q8 247 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 FBXO39Q8N4B4 442 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 FBXO30Q8TB52 745 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 STYXQ8WUJ0 223 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 ESAMQ96AP7 390 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 FBXL20Q96IG2 436 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 TBC1D13Q9NVG8 400 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 DGKBQ9Y6T7 804 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 PRORSD1PA6NEY8 169 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 OR51F1A6NGY5 319 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 SYNCRIPO60506 623 aaKnown RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 SLC35E2BP0CK96 405 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 SERPINH1P50454 418 aaKnown RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 KLHL35Q6PF15 583 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 GPRC5AQ8NFJ5 357 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 KBTBD7Q8WVZ9 684 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 FAM162AQ96A26 154 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 C12orf43Q96C57 262 aaKnown RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 RPL10LQ96L21 214 aaKnown RBP12.65□□□□□ -0.38
LIG1-221ENST00000613670 C12orf42Q96LP6 360 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 BDH2Q9BUT1 245 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 RHOBTB2Q9BYZ6 727 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 KLHL25Q9H0H3 589 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 CDC14AQ9UNH5 594 aa12.65□□□□□ -0.38
LIG1-221ENST00000613670 ZCWPW2A0A1B0GU75 182 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 TTC24A2A3L6 582 aaPredicted RBP12.65□□□□□ -0.39
LIG1-221ENST00000613670 ESRRBO95718 433 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms