RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 FAM92BQ6ZTR7 304 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 THNSL1Q8IYQ7 743 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 BCL7CQ8WUZ0 217 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SNAPC3Q92966 411 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 COPZ2Q9P299 210 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 IFT80Q9P2H3 777 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 APEX2Q9UBZ4 518 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ST14Q9Y5Y6 855 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ALG5Q9Y673 324 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF532Q9HCE3 1301 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 XRN1Q8IZH2 1706 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 K7ENM7 598 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CNPP09543 421 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CD44P16070 742 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FOXN2P32314 431 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 AIF1P55008 147 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 MTX3Q5HYI7 312 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SETD6Q8TBK2 473 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GRHL1Q9NZI5 618 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CPDO75976 1380 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 RGS6P49758 472 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ERVK-8P63133 956 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 KCTD2Q14681 263 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PCID2Q5JVF3 399 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 WDR59Q6PJI9 974 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ARHGAP36Q6ZRI8 547 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CCNYQ8ND76 341 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 C10orf82Q8WW14 230 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TASP1Q9H6P5 420 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 C17orf75Q9HAS0 396 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FOXO3O43524 673 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CFL1P23528 166 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 BST1Q10588 318 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF404Q494X3 552 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 EIF5AL1Q6IS14 154 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TMEM199Q8N511 208 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 AGR3Q8TD06 166 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 EPS8L1Q8TE68 723 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 DDX17Q92841 729 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 EXOC2Q96KP1 924 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PDGFDQ9GZP0 370 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TRIT1Q9H3H1 467 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 STARD7Q9NQZ5 370 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CRYL1Q9Y2S2 319 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HDAC3O15379 428 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FAM189A1O60320 539 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 EGFRP00533 1210 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 AOC1P19801 751 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CYP2C18P33260 490 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HOXD13P35453 343 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 RHEBQ15382 184 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PGBD2Q6P3X8 592 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FOXP4Q8IVH2 680 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PARP8Q8N3A8 854 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 UXS1Q8NBZ7 420 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FBXO36Q8NEA4 188 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MAELQ96JY0 434 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 GOLPH3Q9H4A6 298 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 NDFIP2Q9NV92 336 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 VILLO15195 856 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF37AP17032 561 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MAGP20916 626 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 LCN1P31025 176 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CEBPGP53567 150 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FAAP100Q0VG06 881 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ILF3Q12906 894 aaKnown RBP eCLIP4.97□□□□□ -1.612e-6■■□□□ 13
VPS13D-213ENST00000613099 RPA4Q13156 261 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 BTN1A1Q13410 526 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HCN4Q9Y3Q4 1203 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PCDHA3Q9Y5H8 950 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 DENND3A2RUS2 1198 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 VARSP26640 1264 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TFDP1Q14186 410 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 KCTD20Q7Z5Y7 419 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 OR7G3Q8NG95 312 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 REXO5Q96IC2 774 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MYO10Q9HD67 2058 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FAM149AA5PLN7 773 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MYL12BO14950 172 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TRIM3O75382 744 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 NDST3O95803 873 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZDHHC11BP0C7U3 371 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CYP2A13Q16696 494 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MTHFSDQ2M296 383 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 C16orf46Q6P387 395 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF571Q7Z3V5 609 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 RIOX2Q8IUF8 465 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SH3RF3Q8TEJ3 882 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TESCQ96BS2 214 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 KCNIP3Q9Y2W7 256 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CEPT1Q9Y6K0 416 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MPZL2O60487 215 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CCNDBP1O95273 360 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 METTL18O95568 372 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PPATQ06203 517 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ELOAQ14241 798 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 WSCD2Q2TBF2 565 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 STRIP1Q5VSL9 837 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 METTL3Q86U44 580 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF276Q8N554 614 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms