RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SRP54P61011 504 aaKnown RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 MC1RQ01726 317 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 SERINC3Q13530 473 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 C1orf61Q13536 156 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 RAPGEF1Q13905 1077 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 KLHL40Q2TBA0 621 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 MAP9Q49MG5 647 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 TMEM52BQ4KMG9 183 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 C14orf28Q4W4Y0 310 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 CERCAMQ5T4B2 595 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 TMCO4Q5TGY1 634 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 BORAQ6PGQ7 559 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 OGFOD3Q6PK18 319 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 CRTC1Q6UUV9 634 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 ENPP7Q6UWV6 458 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 STRADAQ7RTN6 431 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 PIM3Q86V86 326 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 ZNF354CQ86Y25 554 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 DNAAF5Q86Y56 855 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 FAM71AQ8IYT1 594 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 RBFAQ8N0V3 343 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 PAF1Q8N7H5 531 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 KYQ8NBH2 561 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 TP53I13Q8NBR0 393 aaPredicted RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 GPR156Q8NFN8 814 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 EXTL1Q92935 676 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 NTAN1Q96AB6 310 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 KIAA1143Q96AT1 154 aaPredicted RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 HMCESQ96FZ2 354 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 TEFMQ96QE5 360 aaKnown RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 TUBGCP5Q96RT8 1024 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 RBM15Q96T37 977 aaKnown RBP eCLIP6.35□□□□□ -1.39
CUX1-220ENST00000607092 TBCBQ99426 244 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 EIF3CQ99613 913 aaKnown RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 CDH19Q9H159 772 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 CATSPERBQ9H7T0 1116 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 PLSCR2Q9NRY7 297 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 ZNF212Q9UDV6 495 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 KLF15Q9UIH9 416 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 DNAJC12Q9UKB3 198 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 ZDHHC9Q9Y397 364 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 PCDHGA3Q9Y5H0 932 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 UTP20O75691 2785 aaKnown RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 UNC13CQ8NB66 2214 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TSPAN11A1L157 253 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ZNF891A8MT65 544 aaPredicted RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 FOXN3O00409 490 aaPredicted RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 FGF10O15520 208 aaPredicted RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 NOBOXO60393 691 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TMCC1O94876 653 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 KRT10P13645 584 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 CYP11B1P15538 503 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TIMP2P16035 220 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 SLC9A1P19634 815 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 PON1P27169 355 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 SERPINA4P29622 427 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 CSTF2P33240 577 aaKnown RBP eCLIP6.34□□□□□ -1.39
CUX1-220ENST00000607092 FLT3P36888 993 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 PTPN9P43378 593 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 CCR10P46092 362 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 MAPK10P53779 464 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 STX17P56962 302 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 CCL7P80098 99 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ZFP36L1Q07352 338 aaKnown RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 ILF3Q12906 894 aaKnown RBP eCLIP6.34□□□□□ -1.392e-6■■■□□ 15.6
CUX1-220ENST00000607092 SEPT6Q14141 434 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 IRF4Q15306 451 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TBR1Q16650 682 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 MAN2A1Q16706 1144 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 UGP2Q16851 508 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ALG11Q2TAA5 492 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 EFHC2Q5JST6 749 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 PHF19Q5T6S3 580 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 OTUD1Q5VV17 481 aaPredicted RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 PPP1R2P3Q6NXS1 205 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TRIM72Q6ZMU5 477 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 RD3Q7Z3Z2 195 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 BNIPLQ7Z465 357 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TAF8Q7Z7C8 310 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 SLC47A2Q86VL8 602 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 FAM131BQ86XD5 332 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 DTX1Q86Y01 620 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 XYLT1Q86Y38 959 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 IRF2BP1Q8IU81 584 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 CREBRFQ8IUR6 639 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 EXD3Q8N9H8 876 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 MLKLQ8NB16 471 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 AGBL5Q8NDL9 886 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 FAM46DQ8NEK8 389 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 OR56A4Q8NGH8 313 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ZNF564Q8TBZ8 553 aaPredicted RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 TAAR9Q96RI9 348 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ZPBPQ9BS86 351 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 APOOQ9BUR5 198 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 CLPBQ9H078 707 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TRIT1Q9H3H1 467 aaKnown RBP6.34□□□□□ -1.39
CUX1-220ENST00000607092 DPEP2Q9H4A9 486 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 SUV39H2Q9H5I1 410 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ATP13A3Q9H7F0 1226 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 ACP6Q9NPH0 428 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms