RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CAMK1DQ8IU85 385 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 DENND6BQ8NEG7 585 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 EXD1Q8NHP7 514 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.32■□□□□ 0.2
LSM4-206ENST00000600289 C1QTNF2Q9BXJ5 285 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 SLC17A9Q9BYT1 436 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 GOLPH3Q9H4A6 298 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 GAREM1Q9H706 876 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 ERVMER34-1Q9H9K5 563 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 HAUS2Q9NVX0 235 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 DUSP10Q9Y6W6 482 aa16.32■□□□□ 0.2
LSM4-206ENST00000600289 CFAP69A5D8W1 941 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 HTRA2O43464 458 aaPredicted RBP16.31■□□□□ 0.2
LSM4-206ENST00000600289 CD59P13987 128 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 CES1P23141 567 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 AKT2P31751 481 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 SCNN1BP51168 640 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 NXPH1P58417 271 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 POLR2LP62875 67 aaKnown RBP16.31■□□□□ 0.2
LSM4-206ENST00000600289 TFDP2Q14188 446 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 FGL2Q14314 439 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 STAT4Q14765 748 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 CFAP58Q5T655 872 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 SPOCD1Q6ZMY3 1216 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 DBX2Q6ZNG2 339 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 ABI3BPQ7Z7G0 1075 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 KIAA1328Q86T90 577 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 ZSWIM9Q86XI8 627 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 CCDC13Q8IYE1 715 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 RCOR2Q8IZ40 523 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 OXR1Q8N573 874 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 LRRC57Q8N9N7 239 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 CCDC112Q8NEF3 446 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 OR2I1PQ8NGU4 316 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 RNF25Q96BH1 459 aaPredicted RBP16.31■□□□□ 0.2
LSM4-206ENST00000600289 RBM41Q96IZ5 413 aaKnown RBP16.31■□□□□ 0.2
LSM4-206ENST00000600289 NSMCE3Q96MG7 304 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 MAK16Q9BXY0 300 aaKnown RBP16.31■□□□□ 0.2
LSM4-206ENST00000600289 POLR1EQ9GZS1 481 aaKnown RBP16.31■□□□□ 0.2
LSM4-206ENST00000600289 BRD8Q9H0E9 1235 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 GPR27Q9NS67 375 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 GGT7Q9UJ14 662 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 ITM2BQ9Y287 266 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 HS3ST3A1Q9Y663 406 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 LRP4O75096 1905 aa16.31■□□□□ 0.2
LSM4-206ENST00000600289 TLR4O00206 839 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 NEMP1O14524 444 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 RIOK3O14730 519 aaKnown RBP16.3■□□□□ 0.2
LSM4-206ENST00000600289 YKT6O15498 198 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 ZRANB2O95218 330 aaKnown RBP eCLIP16.3■□□□□ 0.23e-6■■■■■ 27.8
LSM4-206ENST00000600289 PRLRP16471 622 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 TGM2P21980 687 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 XPAP23025 273 aaPredicted RBP16.3■□□□□ 0.2
LSM4-206ENST00000600289 CTNNA2P26232 953 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 MMP12P39900 470 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 NR2C2P49116 596 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 COPS2P61201 443 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 IFI35P80217 286 aaPredicted RBP16.3■□□□□ 0.2
LSM4-206ENST00000600289 KIF5AQ12840 1032 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 AGERQ15109 404 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 PDK1Q15118 436 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 PPP2R5EQ16537 467 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 UAP1L1Q3KQV9 507 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 TFDP3Q5H9I0 405 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 ERAP2Q6P179 960 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 LAYNQ6UX15 382 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 GCNT7Q6ZNI0 430 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 RFX6Q8HWS3 928 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 DEFB124Q8NES8 71 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 KIAA1524Q8TCG1 905 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 SCUBE2Q9NQ36 999 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 GDF3Q9NR23 364 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 TM7SF3Q9NS93 570 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 FNDC3AQ9Y2H6 1198 aaKnown RBP16.3■□□□□ 0.2
LSM4-206ENST00000600289 ATP8A1Q9Y2Q0 1164 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 PCDHA3Q9Y5H8 950 aa16.3■□□□□ 0.2
LSM4-206ENST00000600289 ACACAQ13085 2346 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 hCG_1818297A0A087WSY0 165 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 A0A1B0GTQ1 180 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 CCDC66A2RUB6 948 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 GRID2IPA4D2P6 1211 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 FAM221BA6H8Z2 402 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 PPP1R12AO14974 1030 aaPredicted RBP16.29■□□□□ 0.2
LSM4-206ENST00000600289 SLC31A1O15431 190 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 ARHGAP6O43182 974 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 PCDHGA12O60330 932 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 MAP3K6O95382 1288 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 TNNT1P13805 278 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 CCNB1P14635 433 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 PTPN7P35236 360 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 MARCKSL1P49006 195 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 CCT8P50990 548 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 KYAT3Q6YP21 454 aaKnown RBP16.29■□□□□ 0.2
LSM4-206ENST00000600289 BZW1Q7L1Q6 419 aaKnown RBP16.29■□□□□ 0.2
LSM4-206ENST00000600289 CXorf40AQ8TE69 158 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 KRT35Q92764 455 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 ELF4Q99607 663 aaPredicted RBP16.29■□□□□ 0.2
LSM4-206ENST00000600289 KLF6Q99612 283 aaPredicted RBP16.29■□□□□ 0.2
LSM4-206ENST00000600289 IL12RB2Q99665 862 aa16.29■□□□□ 0.2
LSM4-206ENST00000600289 DESI2Q9BSY9 194 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms