RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 LRCH4O75427 683 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 GCATO75600 419 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 TCEA3O75764 348 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 RASGRP1O95267 797 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 ELFN1P0C7U0 828 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 TSHRP16473 764 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 TGM2P21980 687 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 MMP12P39900 470 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 ARL4AP40617 200 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 PRKCIP41743 596 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 RGRP47804 291 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 LIG3P49916 1009 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 RENBPP51606 427 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 HK3P52790 923 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 AP1S1P61966 158 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 POLR2LP62875 67 aaKnown RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 TPM4P67936 248 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 IL10RBQ08334 325 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 MTM1Q13496 603 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 NFATC4Q14934 902 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 ISXQ2M1V0 245 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 WSCD2Q2TBF2 565 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 TDRD12Q587J7 1177 aaKnown RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 AFMIDQ63HM1 303 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 CRTC1Q6UUV9 634 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 ENPP7Q6UWV6 458 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 RBM44Q6ZP01 1051 aaKnown RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 RD3Q7Z3Z2 195 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 SRLQ86TD4 932 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 HID1Q8IV36 788 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 ARHGAP12Q8IWW6 846 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 SLC35F3Q8IY50 421 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 LZTR1Q8N653 840 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 NPWQ8N729 165 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 ARL10Q8N8L6 244 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 WDR48Q8TAF3 677 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 GRAMD1AQ96CP6 724 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 NAF1Q96HR8 494 aaKnown RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 FCRL3Q96P31 734 aaPredicted RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 UBL7Q96S82 380 aaPredicted RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 APOOQ9BUR5 198 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 TRIM7Q9C029 511 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 POLR1BQ9H9Y6 1135 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 KLQ9UEF7 1012 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 SEPT3Q9UH03 358 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 OR1A2Q9Y585 309 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 MYLKQ15746 1914 aa9.87□□□□□ -0.83
VRK3-216ENST00000599342 TDRD6O60522 2096 aaKnown RBP9.87□□□□□ -0.83
VRK3-216ENST00000599342 ARID1BQ8NFD5 2236 aaPredicted RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 CFAP69A5D8W1 941 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 DDX3XO00571 662 aaKnown RBP eCLIP9.86□□□□□ -0.833e-12■■□□□ 11.9
VRK3-216ENST00000599342 YY2O15391 372 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 BUB1BO60566 1050 aaPredicted RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 DXOO77932 396 aaKnown RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 PRKCGP05129 697 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SKILP12757 684 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 NFKBIAP25963 317 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 RBMS1P29558 406 aaKnown RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 PCK1P35558 622 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 LSSP48449 732 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 HCAR3P49019 387 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SCNN1BP51168 640 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ERVPABLB-1P60509 514 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SRP54P61011 504 aaKnown RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 NSUN2Q08J23 767 aaKnown RBP eCLIP9.86□□□□□ -0.83
VRK3-216ENST00000599342 DPYSQ14117 519 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SPIDRQ14159 915 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ZNF235Q14590 738 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 INPP5AQ14642 412 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 LBRQ14739 615 aaKnown RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 AGERQ15109 404 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 TCEA2Q15560 299 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ALG11Q2TAA5 492 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SMTNL2Q2TAL5 461 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 C3orf38Q5JPI3 329 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 PERM1Q5SV97 790 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 TMCO4Q5TGY1 634 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 BROXQ5VW32 411 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 E4F1Q66K89 784 aaPredicted RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 LVRNQ6Q4G3 990 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 TMCO3Q6UWJ1 677 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ARHGAP36Q6ZRI8 547 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ZSWIM9Q86XI8 627 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 GKN2Q86XP6 184 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SPACA3Q8IXA5 215 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 BBS5Q8N3I7 341 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SDR16C5Q8N3Y7 309 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ARFGAP1Q8N6T3 406 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 PCDH19Q8TAB3 1148 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 NSMCE1Q8WV22 266 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 HSPH1Q92598 858 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 TSACCQ96A04 125 aaPredicted RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 WDR92Q96MX6 357 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 CCDC3Q9BQI4 270 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.86□□□□□ -0.83
VRK3-216ENST00000599342 EDEM3Q9BZQ6 932 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 CLPBQ9H078 707 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 PRORYQ9H606 182 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 THSD1Q9NS62 852 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 CWC15Q9P013 229 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms