RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 RANBP9Q96S59 729 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 TRMT61BQ9BVS5 477 aaKnown RBP13.58□□□□□ -0.24
VMP1-217ENST00000593168 KIFC1Q9BW19 673 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 OSBPL6Q9BZF3 934 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 ACSS3Q9H6R3 686 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 TMBIM4Q9HC24 238 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 PIH1D1Q9NWS0 290 aaKnown RBP13.58□□□□□ -0.24
VMP1-217ENST00000593168 SAMD15Q9P1V8 674 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 DEC1Q9P2X7 70 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 SOX13Q9UN79 622 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 SMG5Q9UPR3 1016 aaKnown RBP13.58□□□□□ -0.24
VMP1-217ENST00000593168 PCDHGA2Q9Y5H1 932 aa13.58□□□□□ -0.24
VMP1-217ENST00000593168 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 OTOL1A6NHN0 477 aaPredicted RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 GOLGA8KD6RF30 607 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 TRIM24O15164 1050 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 TIMM44O43615 452 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 ATP9BO43861 1147 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 GJB3O75712 270 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 USP1O94782 785 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 ALDH1A2O94788 518 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 IGSF6O95976 241 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 GSRP00390 522 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 FGF1P05230 155 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 ATP5BP06576 529 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 POLBP06746 335 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 SRPRAP08240 638 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 ATXN1LP0C7T5 689 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 CA4P22748 312 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 PRKCHP24723 683 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 ADRA1DP25100 572 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 TARSP26639 723 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 GDI1P31150 447 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 EIF2DP41214 584 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 CTSOP43234 321 aaPredicted RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 CHRNA4P43681 627 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 SNRPD1P62314 119 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 MSLNQ13421 630 aaPredicted RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 GRM2Q14416 872 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 RASA2Q15283 850 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 KRT71Q3SY84 523 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 DGKKQ5KSL6 1271 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 SPANXN3Q5MJ09 141 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 TMEM215Q68D42 235 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 GRAMD4Q6IC98 578 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 PKN3Q6P5Z2 889 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 ZNF449Q6P9G9 518 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 CAPN12Q6ZSI9 719 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 C12orf40Q86WS4 652 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 TDRPQ86YL5 185 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 OR2AP1Q8NGE2 309 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 FBF1Q8TES7 1133 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 PGM2Q96G03 612 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 RPL10LQ96L21 214 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 NSMCE3Q96MG7 304 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 CYTH2Q99418 400 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 TDRD1Q9BXT4 1180 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 PLAC1Q9HBJ0 212 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 MRM3Q9HC36 420 aaKnown RBP13.57□□□□□ -0.24
VMP1-217ENST00000593168 ZSCAN32Q9NX65 697 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 MOCS1Q9NZB8 636 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 OGFRQ9NZT2 677 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 SLC24A2Q9UI40 661 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 ERVW-1Q9UQF0 538 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 RAI2Q9Y5P3 530 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 RPS6KL1Q9Y6S9 549 aa13.57□□□□□ -0.24
VMP1-217ENST00000593168 COL4A2P08572 1712 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 EXOC1LA0A1B0GW35 172 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 SHISA7A6NL88 538 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 C1QAP02745 245 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 DLDP09622 509 aaKnown RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 TGM1P22735 817 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 GJA4P35212 333 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 NNMTP40261 264 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 MAGEA9P43362 315 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 SLC6A11P48066 632 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 STK19P49842 368 aaPredicted RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 CRADDP78560 199 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 PFKPQ01813 784 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 FZD5Q13467 585 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 EIF4HQ15056 248 aaKnown RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 DLG2Q15700 870 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 LONRF1Q17RB8 773 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 ITPRIPL2Q3MIP1 535 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 PREPLQ4J6C6 727 aaPredicted RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 ANKRD20A4Q4UJ75 823 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 SIRPB2Q5JXA9 342 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 AGBL2Q5U5Z8 902 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 C22orf39Q6P5X5 142 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 TPRG1Q6ZUI0 275 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 KDELC2Q7Z4H8 507 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 RIBC1Q8N443 379 aaPredicted RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 SLC25A41Q8N5S1 370 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 PPHLN1Q8NEY8 458 aaKnown RBP13.56□□□□□ -0.24
VMP1-217ENST00000593168 CLDN23Q96B33 292 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 MRGPRX3Q96LB0 322 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 TM6SF2Q9BZW4 377 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 PARD6AQ9NPB6 346 aa13.56□□□□□ -0.24
VMP1-217ENST00000593168 VPS18Q9P253 973 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms