RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CCDC22O60826 627 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 TPSB2P20231 275 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 EFTUD2Q15029 972 aaKnown RBP eCLIP9.89□□□□□ -0.835e-6■■■■□ 20.8
LIG3-216ENST00000593099 TPSAB1Q15661 275 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CNGA3Q16281 694 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CRY1Q16526 586 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 MUM1Q2TAK8 710 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 TCEAL5Q5H9L2 206 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 STXBP5Q5T5C0 1151 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 RHBDF2Q6PJF5 856 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 RTN4RL1Q86UN2 441 aaPredicted RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 SLC22A9Q8IVM8 553 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 ZNF567Q8N184 647 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 NKAPQ8N5F7 415 aaKnown RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 BEND7Q8N7W2 519 aaPredicted RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 DCAF4L2Q8NA75 395 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 HDAC7Q8WUI4 952 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 TEKT5Q96M29 485 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 GDE1Q9NZC3 331 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 C6orf203Q9P0P8 240 aaPredicted RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 SALL4Q9UJQ4 1053 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 FBXO5Q9UKT4 447 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 KANSL1LA0AUZ9 987 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 C2orf78A6NCI8 922 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SLC35G4P0C7Q5 338 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 MLNP12872 115 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 ALADP13716 330 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CHN1P15882 459 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 TSHRP16473 764 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 IL1R2P27930 398 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 MAGEA9P43362 315 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CHI3L2Q15782 390 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 UNC5AQ6ZN44 842 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 EIF1ADQ8N9N8 165 aaKnown RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 OR4K2Q8NGD2 314 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 RNF217Q8TC41 542 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CYB5D2Q8WUJ1 264 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SDCCAG3Q96C92 435 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 WRAP53Q9BUR4 548 aaKnown RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 THEGQ9P2T0 379 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 PHTF1Q9UMS5 762 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 GLYATL1P3A0A0U1RQE8 302 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SLC31A1O15431 190 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 MAN1A2O60476 641 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SNAP91O60641 907 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 CDK14O94921 469 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 AP2A1O95782 977 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 GUCA1CO95843 209 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SPAM1P38567 509 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 ABCE1P61221 599 aaKnown RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 BEND6Q5SZJ8 279 aaPredicted RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 ZNF776Q68DI1 518 aaPredicted RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 SLC30A9Q6PML9 568 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 GPRIN1Q7Z2K8 1008 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 TTC9BQ8N6N2 239 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SPPL3Q8TCT6 385 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 SLC2A13Q96QE2 648 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 PRPF18Q99633 342 aaKnown RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 FAM126AQ9BYI3 521 aaPredicted RBP9.89□□□□□ -0.83
LIG3-216ENST00000593099 PSD3Q9NYI0 1048 aa9.89□□□□□ -0.83
LIG3-216ENST00000593099 BTN3A1O00481 513 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 GCATO75600 419 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 LATS1O95835 1130 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 DLDP09622 509 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 GNSP15586 552 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 AKT2P31751 481 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 VIPR2P41587 438 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 TCEA2Q15560 299 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 SPDYE7PQ495Y7 208 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 FAM45BPQ6NSW5 357 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 PKN3Q6P5Z2 889 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ALKAL1Q6UXT8 129 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 FBXO39Q8N4B4 442 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 OR2AP1Q8NGE2 309 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 FAM45AQ8TCE6 357 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CAVIN3Q969G5 261 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 COQ7Q99807 217 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ILKAPQ9H0C8 392 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 SUV39H2Q9H5I1 410 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 C8orf33Q9H7E9 229 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 FBXO6Q9NRD1 293 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 CXXC1Q9P0U4 656 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 FBXO9Q9UK97 447 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 POLR2AP24928 1970 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 TCP11X1B4DZS4 312 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 HAUS5O94927 633 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CPA3P15088 417 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 TMC3Q7Z5M5 1100 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 C11orf96Q7Z7L8 435 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 MMAAQ8IVH4 418 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 HLA-CQ95604 372 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 DACT3Q96B18 629 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 MED8Q96G25 268 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 C1orf74Q96LT6 269 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 GDF3Q9NR23 364 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 SYBUQ9NX95 663 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 SPASTQ9UBP0 616 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 LIMD1Q9UGP4 676 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ANKRD6Q9Y2G4 727 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 KIAA1551Q9HCM1 1747 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms