RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CDC25CP30307 473 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 HNRNPH1P31943 449 aaKnown RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 SERPINB5P36952 375 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 SLC26A3P40879 764 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 AQP5P55064 265 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 SMAD3P84022 425 aaKnown RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 ITGA9Q13797 1035 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 SNCBQ16143 134 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 INO80DQ53TQ3 878 aaPredicted RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 RNF219Q5W0B1 726 aaPredicted RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 FAM45BPQ6NSW5 357 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 KLC3Q6P597 504 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 ZCCHC23Q6ZST2 131 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 RTL10Q7L3V2 364 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 CILP2Q8IUL8 1156 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 DENND6AQ8IWF6 608 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 FAM217AQ8IXS0 508 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 GPATCH11Q8N954 259 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 OR13J1Q8NGT2 312 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 OR6P1Q8NGX9 317 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 FAM45AQ8TCE6 357 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 USP13Q92995 863 aaPredicted RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 TRIM43Q96BQ3 446 aaPredicted RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 CCDC126Q96EE4 140 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 MRPL57Q9BQC6 102 aaKnown RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 MUC3BQ9H195 1237 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 MRPL46Q9H2W6 279 aaKnown RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 OXSMQ9NWU1 459 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 CDH23Q9H251 3354 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SLCO1B7G3V0H7 640 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 H0Y626 953 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 MUSKO15146 869 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 PFDN6O15212 129 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 PHGDHO43175 533 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 TBL1XO60907 577 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 FGF18O76093 207 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 LUC7L3O95232 432 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 FGF19O95750 216 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 GLP2RO95838 553 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 ADH1AP07327 375 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SERPINA6P08185 405 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 RBP1P09455 135 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 HDCP19113 662 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 CR2P20023 1033 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SAT1P21673 171 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 PSMA3P25788 255 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 ABCG1P45844 678 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 TAS2R39P59534 338 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 KCNJ2P63252 427 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SLC7A9P82251 487 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 IRF9Q00978 393 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SLC20A2Q08357 652 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 PPIGQ13427 754 aaKnown RBP eCLIP11.32□□□□□ -0.64e-7■□□□□ 11.3
LIG3-204ENST00000585740 CYTH1Q15438 398 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 TAF1AQ15573 450 aaPredicted RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 DLG2Q15700 870 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 FAM83EQ2M2I3 478 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 CTC1Q2NKJ3 1217 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 AGAP9Q5VTM2 703 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 CES4AQ5XG92 561 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 CXorf57Q6NSI4 855 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 Q6ZNB5 142 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SDCCAG8Q86SQ7 713 aaPredicted RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 METTL3Q86U44 580 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 KIRREL3Q8IZU9 778 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 CPXM2Q8N436 756 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 MAGEC3Q8TD91 643 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 BLOC1S5Q8TDH9 187 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 PDCD6IPQ8WUM4 868 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 HDAC10Q969S8 669 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 TMA16Q96EY4 203 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 ZFRQ96KR1 1074 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 RILPQ96NA2 401 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 TRIB3Q96RU7 358 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 SORT1Q99523 831 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 EMILIN2Q9BXX0 1053 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 ADGRE3Q9BY15 652 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 IL21Q9HBE4 155 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 NOD2Q9HC29 1040 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 ZNF334Q9HCZ1 680 aaPredicted RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 FBXO6Q9NRD1 293 aaPredicted RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 ZNF358Q9NW07 568 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 HACD3Q9P035 362 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 HAO1Q9UJM8 370 aa11.32□□□□□ -0.6
LIG3-204ENST00000585740 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 HELZP42694 1942 aaKnown RBP11.32□□□□□ -0.6
LIG3-204ENST00000585740 TRAV19A0A0A6YYK7 116 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CXorf51AA0A1B0GTR3 108 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 C2orf81A6NN90 581 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CBX4O00257 560 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 GFRA2O00451 464 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 ITM2AO43736 263 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 NPHS1O60500 1241 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 TSPAN3O60637 253 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 LYPLA1O75608 230 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 WFS1O76024 890 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 C1RP00736 705 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 LTA4HP09960 611 aaKnown RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 T-ENOLP0DO92 83 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 KITP10721 976 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms