RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	GAS2L3	Q86XJ1	694 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	RHOT2	Q8IXI1	618 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	DENND6B	Q8NEG7	585 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	FAM174A	Q8TBP5	190 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	SLC39A7	Q92504	469 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	MRFAP1L1	Q96HT8	127 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	BMF	Q96LC9	184 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	LENG8	Q96PV6	779 aa	Predicted RBP	13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	MGME1	Q9BQP7	344 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	CALN1	Q9BXU9	219 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	ATP13A3	Q9H7F0	1226 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	INTU	Q9ULD6	942 aa		13.43	□□□□□ -0.26
SREBF1-223	ENST00000584760	TMEM110-MUSTN1	A8MSY1	372 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	LCA5L	O95447	670 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	CR2	P20023	1033 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	SERPINA4	P29622	427 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	MMP12	P39900	470 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	ARHGAP25	P42331	645 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	CLDN6	P56747	220 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	AP1S1	P61966	158 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	ELP6	Q0PNE2	266 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	GALNT2	Q10471	571 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZNF235	Q14590	738 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	TMEM52B	Q4KMG9	183 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	ANKRD20A8P	Q5CZ79	823 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	PTAR1	Q7Z6K3	402 aa	Predicted RBP	13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	PGBD5	Q8N414	524 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	PQLC3	Q8N755	202 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	KCTD6	Q8NC69	237 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	SPOCK2	Q92563	424 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	RAPGEF5	Q92565	580 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	WRAP53	Q9BUR4	548 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	PCDH12	Q9NPG4	1184 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	FTSJ1	Q9UET6	329 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	ATP8A1	Q9Y2Q0	1164 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	HS3ST3A1	Q9Y663	406 aa		13.42	□□□□□ -0.26
SREBF1-223	ENST00000584760	CELSR3	Q9NYQ7	3312 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	TRAFD1	O14545	582 aa	Predicted RBP	13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	MMP20	O60882	483 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	C1QL1	O75973	258 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	TM7SF2	O76062	418 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	ITGAV	P06756	1048 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	JUP	P14923	745 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	FECH	P22830	423 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	IGFALS	P35858	605 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	HSPA9	P38646	679 aa	Known RBP	13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	GARS	P41250	739 aa	Known RBP	13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	SCNN1B	P51168	640 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	RENBP	P51606	427 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	PFN3	P60673	137 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	SEMG2	Q02383	582 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	RALGDS	Q12967	914 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	BNIP3	Q12983	259 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	SGCG	Q13326	291 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	CFAP58	Q5T655	872 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	KDM7A	Q6ZMT4	941 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760		Q6ZSR6	202 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	TMPRSS12	Q86WS5	348 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	LRRC49	Q8IUZ0	686 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	CXorf40A	Q8TE69	158 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	CENPT	Q96BT3	561 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	CAAP1	Q9H8G2	361 aa		13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	SMG1	Q96Q15	3661 aa	Known RBP	13.41	□□□□□ -0.26
SREBF1-223	ENST00000584760	ASXL3	Q9C0F0	2248 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	TTC24	A2A3L6	582 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	C3orf70	A6NLC5	250 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	ZNF487	B1APH4	448 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	RIOK3	O14730	519 aa	Known RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	FPGT	O14772	594 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	HTRA2	O43464	458 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	SDC3	O75056	442 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	SOCS5	O75159	536 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	MAP3K6	O95382	1288 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	PRKCG	P05129	697 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	C6	P13671	934 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	XPA	P23025	273 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	KDELR1	P24390	212 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	MMP13	P45452	471 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	RABIF	P47224	123 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	HADHB	P55084	474 aa	Known RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	GBE1	Q04446	702 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	BCL2L1	Q07817	233 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	FZD2	Q14332	565 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	TPRG1L	Q5T0D9	272 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	LRRC38	Q5VT99	294 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	LRRC69	Q6ZNQ3	347 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	VSIG1	Q86XK7	387 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	DCP2	Q8IU60	420 aa	Known RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	MAP7D3	Q8IWC1	876 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	TEX26	Q8N6G2	289 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	TP53I13	Q8NBR0	393 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	MAML1	Q92585	1016 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	FATE1	Q969F0	183 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	IFT43	Q96FT9	208 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	PANX2	Q96RD6	677 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	NUDCD1	Q96RS6	583 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	RAI2	Q9Y5P3	530 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	AK5	Q9Y6K8	562 aa		13.4	□□□□□ -0.26
SREBF1-223	ENST00000584760	SPTY2D1-AS1	A0A0U1RR47	76 aa		13.39	□□□□□ -0.27
SREBF1-223	ENST00000584760	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms