RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 HYOU1Q9Y4L1 999 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 NEUROG3Q9Y4Z2 214 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 PCDHGC4Q9Y5F7 938 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 CACNA1BQ00975 2339 aa24.06■■□□□ 1.44
SHMT1-206ENST00000579558 SPTY2D1-AS1A0A0U1RR47 76 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 ENC1O14682 589 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 SOCS5O75159 536 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 KRT1P04264 644 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 TNNT1P13805 278 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 DGKAP23743 735 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 LIG3P49916 1009 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 SPA17Q15506 151 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 CCDC157Q569K6 752 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 ODF2Q5BJF6 829 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 ZNF542PQ5EBM4 170 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 RALGPS1Q5JS13 557 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 LRRC38Q5VT99 294 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 PARGQ86W56 976 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 TEX26Q8N6G2 289 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 PDCD6IPQ8WUM4 868 aaKnown RBP24.05■■□□□ 1.44
SHMT1-206ENST00000579558 MBNL1Q9NR56 388 aaKnown RBP24.05■■□□□ 1.44
SHMT1-206ENST00000579558 PCDHA13Q9Y5I0 950 aa24.05■■□□□ 1.44
SHMT1-206ENST00000579558 TDRD6O60522 2096 aaKnown RBP24.05■■□□□ 1.44
SHMT1-206ENST00000579558 A0A1W2PQ67 120 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 ZNF487B1APH4 448 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 HTRA2O43464 458 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-206ENST00000579558 SPOPO43791 374 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 LZTS3O60299 673 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-206ENST00000579558 PIAS2O75928 621 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 MX2P20592 715 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 COMTP21964 271 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 CCNCP24863 283 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 THOP1P52888 689 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 LRRC14Q15048 493 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 IRF4Q15306 451 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 TPRG1LQ5T0D9 272 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 RHOT1Q8IXI2 618 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 TRAF3IP1Q8TDR0 691 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-206ENST00000579558 MAML1Q92585 1016 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 ZNF830Q96NB3 372 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-206ENST00000579558 TSGA13Q96PP4 275 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 CAAP1Q9H8G2 361 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 LUC7LQ9NQ29 371 aaKnown RBP24.04■■□□□ 1.44
SHMT1-206ENST00000579558 UCKL1Q9NWZ5 548 aa24.04■■□□□ 1.44
SHMT1-206ENST00000579558 C3orf70A6NLC5 250 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-206ENST00000579558 MATN3O15232 486 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 DKK1O94907 266 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 CPP00450 1065 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 HADHBP55084 474 aaKnown RBP24.03■■□□□ 1.44
SHMT1-206ENST00000579558 HNRNPKP61978 463 aaKnown RBP eCLIP24.03■■□□□ 1.44
SHMT1-206ENST00000579558 ITKQ08881 620 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 SLC10A2Q12908 348 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-206ENST00000579558 TRAF2Q12933 501 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 RALGDSQ12967 914 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 WSCD2Q2TBF2 565 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 DPPA4Q7L190 304 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 VSIG1Q86XK7 387 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 SLC25A45Q8N413 288 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 MAK16Q9BXY0 300 aaKnown RBP24.03■■□□□ 1.44
SHMT1-206ENST00000579558 DDX56Q9NY93 547 aaKnown RBP24.03■■□□□ 1.44
SHMT1-206ENST00000579558 DTLQ9NZJ0 730 aa24.03■■□□□ 1.44
SHMT1-206ENST00000579558 CFAP69A5D8W1 941 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 H3BM21 787 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 TOR1BO14657 336 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 NEBLO76041 1014 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 CSF2P04141 144 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 ELFN1P0C7U0 828 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 YPEL5P62699 121 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 PTK2BQ14289 1009 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 PLD5Q8N7P1 536 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 CCNYQ8ND76 341 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 LRRN4Q8WUT4 740 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 SPOCK2Q92563 424 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 FATE1Q969F0 183 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 RNF25Q96BH1 459 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-206ENST00000579558 HDAC11Q96DB2 347 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 SEMA3CQ99985 751 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 POLR1EQ9GZS1 481 aaKnown RBP24.02■■□□□ 1.44
SHMT1-206ENST00000579558 HAUS2Q9NVX0 235 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 RBM22Q9NW64 420 aaKnown RBP eCLIP24.02■■□□□ 1.44
SHMT1-206ENST00000579558 TFR2Q9UP52 801 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 MSRB2Q9Y3D2 182 aa24.02■■□□□ 1.44
SHMT1-206ENST00000579558 SOWAHDA6NJG2 315 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 A8MX80 341 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 APOL1O14791 398 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 FFAR2O15552 330 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 NME1P15531 152 aaKnown RBP24.01■■□□□ 1.43
SHMT1-206ENST00000579558 FECHP22830 423 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 DNAJC3Q13217 504 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 AGERQ15109 404 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 HS1BP3Q53T59 392 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 SLC9A4Q6AI14 798 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 LIPIQ6XZB0 460 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 RFX6Q8HWS3 928 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 TMTC1Q8IUR5 882 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 B4GALT6Q9UBX8 382 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 TTLL3Q9Y4R7 772 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 HEY1Q9Y5J3 304 aa24.01■■□□□ 1.43
SHMT1-206ENST00000579558 KMT2BQ9UMN6 2715 aaPredicted RBP24.01■■□□□ 1.43
SHMT1-206ENST00000579558 ARID1BQ8NFD5 2236 aaPredicted RBP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 536.6 ms