RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CST8O60676 142 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 SOCS5O75159 536 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 ZNF883P0CG24 379 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 CDKN2BP42772 138 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 DSC2Q02487 901 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 OVGP1Q12889 678 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 PDK1Q15118 436 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 INAVAQ3KP66 663 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 TFDP3Q5H9I0 405 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 GCNT7Q6ZNI0 430 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 B4GALNT4Q76KP1 1039 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 IQCHQ86VS3 1027 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 KATNAL2Q8IYT4 538 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 OXR1Q8N573 874 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 TMEM145Q8NBT3 493 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 KRT35Q92764 455 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 CAMK1GQ96NX5 476 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 TSGA13Q96PP4 275 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 C1QTNF2Q9BXJ5 285 aa19.63■□□□□ 0.73
SS18-209ENST00000578595 GOLGA4Q13439 2230 aaKnown RBP19.63■□□□□ 0.73
SS18-209ENST00000578595 GOLGA8CPA6NN73 597 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 BTNL10A8MVZ5 291 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 RIOK3O14730 519 aaKnown RBP19.62■□□□□ 0.73
SS18-209ENST00000578595 FLRT2O43155 660 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 PJA2O43164 708 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 JCHAINP01591 159 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 HLA-DQB2P05538 268 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 PTMAP06454 111 aaKnown RBP19.62■□□□□ 0.73
SS18-209ENST00000578595 ITGAVP06756 1048 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 ELFN1P0C7U0 828 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 C6P13671 934 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 NFKBIAP25963 317 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 MMP12P39900 470 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 TRAF2Q12933 501 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 RALGPS1Q5JS13 557 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 ARMC12Q5T9G4 340 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 DENND2CQ68D51 928 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 Q6ZSR6 202 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 GATAD2AQ86YP4 633 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 RCOR2Q8IZ40 523 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 RHBDD1Q8TEB9 315 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 MAML1Q92585 1016 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 CEP41Q9BYV8 373 aa19.62■□□□□ 0.73
SS18-209ENST00000578595 A0A1B0GTQ1 180 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 SPAARA0A1B0GVQ0 90 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 POM121BA6NF01 834 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 NRDCO43847 1150 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 CEACAM1P13688 526 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 CR2P20023 1033 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 CA4P22748 312 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 CTNNA1P35221 906 aaKnown RBP19.61■□□□□ 0.73
SS18-209ENST00000578595 CETN2P41208 172 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 LIG3P49916 1009 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 THOP1P52888 689 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 EPHB1P54762 984 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 SIM1P81133 766 aaPredicted RBP19.61■□□□□ 0.73
SS18-209ENST00000578595 PPIDQ08752 370 aaKnown RBP19.61■□□□□ 0.73
SS18-209ENST00000578595 TMEM52BQ4KMG9 183 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 BZW1Q7L1Q6 419 aaKnown RBP19.61■□□□□ 0.73
SS18-209ENST00000578595 PEX26Q7Z412 305 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 PIP4P1Q86T03 277 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 SPATS2Q86XZ4 545 aaKnown RBP19.61■□□□□ 0.73
SS18-209ENST00000578595 TEX26Q8N6G2 289 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 CCDC112Q8NEF3 446 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 DENND6BQ8NEG7 585 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 EXD1Q8NHP7 514 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 P3H4Q92791 437 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 HEMGNQ9BXL5 484 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 SAE1Q9UBE0 346 aaPredicted RBP19.61■□□□□ 0.73
SS18-209ENST00000578595 AMFRQ9UKV5 643 aa19.61■□□□□ 0.73
SS18-209ENST00000578595 DNAH14Q0VDD8 3507 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 hCG_1818297A0A087WSY0 165 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 A0A0U1RQJ8 604 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 A0A1W2PQ67 120 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 GRID2IPA4D2P6 1211 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 GOLGA6L3A6NEY3 463 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 TRAFD1O14545 582 aaPredicted RBP19.6■□□□□ 0.73
SS18-209ENST00000578595 YKT6O15498 198 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 SDC3O75056 442 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 TGM2P21980 687 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 ZBTB17Q13105 803 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 PDE1CQ14123 709 aaPredicted RBP19.6■□□□□ 0.73
SS18-209ENST00000578595 ACOX1Q15067 660 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 KYAT3Q6YP21 454 aaKnown RBP19.6■□□□□ 0.73
SS18-209ENST00000578595 KDM7AQ6ZMT4 941 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 SYCE1Q8N0S2 351 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 NDUFAF2Q8N183 169 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 ECHDC3Q96DC8 303 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 NSMCE3Q96MG7 304 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 GRPEL1Q9HAV7 217 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 DNAJC28Q9NX36 388 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 PCDHGB2Q9Y5G2 931 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 RAI2Q9Y5P3 530 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 HS3ST3A1Q9Y663 406 aa19.6■□□□□ 0.73
SS18-209ENST00000578595 CCDC66A2RUB6 948 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 PGLSO95336 258 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 FTCDO95954 541 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 PCCBP05166 539 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 CYP2A6P11509 494 aaPredicted RBP19.59■□□□□ 0.73
SS18-209ENST00000578595 PECAM1P16284 738 aaPredicted RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms