RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 IGHV5-10-1A0A0J9YXX1 117 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 BICDL2A1A5D9 508 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 ILVBLA1L0T0 632 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 CACNB4O00305 520 aaPredicted RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 HSF2BPO75031 334 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 SRGAP2O75044 1071 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 ZNF821O75541 412 aaPredicted RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 POP4O95707 220 aaKnown RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 OAS2P29728 719 aaKnown RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 GKP32189 559 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 GEMIN4P57678 1058 aaKnown RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 HLTFQ14527 1009 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS53-207ENST00000570510 TAF5Q15542 800 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 CLPPQ16740 277 aaPredicted RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 SPECC1LQ69YQ0 1117 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 DENND1BQ6P3S1 775 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 OGFOD3Q6PK18 319 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 IRF2BP1Q8IU81 584 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 UBR7Q8N806 425 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 TP53I13Q8NBR0 393 aaPredicted RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 PMEPA1Q969W9 287 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 CEP63Q96MT8 703 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 GBP4Q96PP9 640 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 TEFMQ96QE5 360 aaKnown RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 NUDT22Q9BRQ3 303 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 SLC4A5Q9BY07 1137 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 TKTL2Q9H0I9 626 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 METTL14Q9HCE5 456 aaKnown RBP11.18□□□□□ -0.62
VPS53-207ENST00000570510 MPP6Q9NZW5 540 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 HPCAL4Q9UM19 191 aa11.18□□□□□ -0.62
VPS53-207ENST00000570510 SCN8AQ9UQD0 1980 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 RP1L1Q8IWN7 2480 aaPredicted RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 CENPEQ02224 2701 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 GOLGA6L22H0YM25 854 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 B4GAT1O43505 415 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 LETM1O95202 739 aaPredicted RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 FGFR1OPO95684 399 aaKnown RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 GNA14O95837 355 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 PCCBP05166 539 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 GLI1P08151 1106 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 KELP23276 732 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 MPSTP25325 297 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 RPL34P49207 117 aaKnown RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 LIMK2P53671 638 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 SNX16P57768 344 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 B4GALNT1Q00973 533 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 ELP6Q0PNE2 266 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 PNOCQ13519 176 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 EIF4EBP2Q13542 120 aaPredicted RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 C5orf22Q49AR2 442 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 ACBD5Q5T8D3 534 aaPredicted RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 ANKS6Q68DC2 871 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 GDPD4Q6W3E5 623 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 ZNF783Q6ZMS7 281 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 RRAGAQ7L523 313 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 TMEM110Q86TL2 294 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 ZNF354CQ86Y25 554 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 PRR7Q8TB68 274 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 ISG20Q96AZ6 181 aaKnown RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 PDXPQ96GD0 296 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 TRIT1Q9H3H1 467 aaKnown RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 SYNCQ9H7C4 482 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 ARMCX3Q9UH62 379 aaPredicted RBP11.17□□□□□ -0.62
VPS53-207ENST00000570510 PILRAQ9UKJ1 303 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 COQ6Q9Y2Z9 468 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 DGKBQ9Y6T7 804 aa11.17□□□□□ -0.62
VPS53-207ENST00000570510 LOC101059948A0A1B0GTJ6 334 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 AREL1O15033 823 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 INPP4BO15327 924 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 THAP12O43422 761 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 POU3F2P20265 443 aaPredicted RBP11.16□□□□□ -0.62
VPS53-207ENST00000570510 ETFBP38117 255 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 PRCPP42785 496 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 ARSDP51689 593 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 GNA12Q03113 381 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 ABHD18Q0P651 414 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 MYLK3Q32MK0 819 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 BRMS1LQ5PSV4 323 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 CFAP58Q5T655 872 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 ATP1A1-AS1Q5TC04 95 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 CEACAM20Q6UY09 585 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 TICAM1Q8IUC6 712 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 PLPP6Q8IY26 295 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 DRC7Q8IY82 874 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 OR2AP1Q8NGE2 309 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 OR4D9Q8NGE8 314 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 OR56A4Q8NGH8 313 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 AHCYL2Q96HN2 611 aaKnown RBP11.16□□□□□ -0.62
VPS53-207ENST00000570510 SLC2A13Q96QE2 648 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 DPYSL5Q9BPU6 564 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 TMEM168Q9H0V1 697 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 SUDS3Q9H7L9 328 aaPredicted RBP11.16□□□□□ -0.62
VPS53-207ENST00000570510 CYP4F12Q9HCS2 524 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 KIAA1468Q9P260 1216 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 KCNMB2Q9Y691 235 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 SDK2Q58EX2 2172 aa11.16□□□□□ -0.62
VPS53-207ENST00000570510 C2CD3Q4AC94 2353 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 B4E171 279 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 P4HA2O15460 535 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 RFPL1O75677 317 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms