RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 BCL2L1Q07817 233 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 FGL2Q14314 439 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 SPARCL1Q14515 664 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 TRADDQ15628 312 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 TRIP13Q15645 432 aaPredicted RBP9.35□□□□□ -0.91
VPS35-211ENST00000569950 UGP2Q16851 508 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 TMEM259Q4ZIN3 620 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 MICALCLQ6ZW33 695 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 DSG4Q86SJ6 1040 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 LONP2Q86WA8 852 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 SLC41A1Q8IVJ1 513 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 BBS5Q8N3I7 341 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 HDDC3Q8N4P3 179 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 CPT1BQ92523 772 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 FEM1CQ96JP0 617 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 CCDC114Q96M63 670 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 LYSMD1Q96S90 227 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 KRT12Q99456 494 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 ARNT2Q9HBZ2 717 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 PCDH12Q9NPG4 1184 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 VPS45Q9NRW7 570 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 FAM153AQ9UHL3 310 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 RSPH14Q9UHP6 348 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 SCML1Q9UN30 329 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 CYP8B1Q9UNU6 501 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 ZFR2Q9UPR6 939 aaKnown RBP9.35□□□□□ -0.91
VPS35-211ENST00000569950 PCDH15Q96QU1 1955 aa9.35□□□□□ -0.91
VPS35-211ENST00000569950 C1QTNF3-AMACRE9PGA6 284 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 AURKAO14965 403 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 LATO43561 262 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 AP1G1O43747 822 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 RNASEH2AO75792 299 aaKnown RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 ZNF189O75820 626 aaPredicted RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 ALDH1A2O94788 518 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 NDST3O95803 873 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 EPOP01588 193 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 DNTTP04053 509 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 HNF1BP35680 557 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 NEK3P51956 506 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 RPL26P61254 145 aaKnown RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 CDK18Q07002 472 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 ITKQ08881 620 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 MPP3Q13368 585 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 GALNT3Q14435 633 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 GRM3Q14832 879 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 SLC1A5Q15758 541 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 TMEM52BQ4KMG9 183 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 SIRPB2Q5JXA9 342 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 SYCP2LQ5T4T6 812 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 RNASEH2BQ5TBB1 312 aaKnown RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 FAM46CQ5VWP2 391 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 DUPD1Q68J44 220 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 ITPRIPL1Q6GPH6 555 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 BRAT1Q6PJG6 821 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 ARHGEF18Q6ZSZ5 1173 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 RFLNAQ6ZTI6 216 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 DPPA4Q7L190 304 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 TSPAN33Q86UF1 283 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 FAM124AQ86V42 546 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 TTC30BQ8N4P2 665 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 MMGT1Q8N4V1 131 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 PDCD7Q8N8D1 485 aaKnown RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 NAT8LQ8N9F0 302 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 C1orf216Q8TAB5 229 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 SEC14L1Q92503 715 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 SCRN2Q96FV2 425 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 TOE1Q96GM8 510 aaKnown RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 APOL2Q9BQE5 337 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 FAM126AQ9BYI3 521 aaPredicted RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 C6orf106Q9H6K1 298 aaPredicted RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 RAB6BQ9NRW1 208 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 ZSCAN32Q9NX65 697 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 GRHL1Q9NZI5 618 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 PAK5Q9P286 719 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 B4GALT6Q9UBX8 382 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 RPL26L1Q9UNX3 145 aaKnown RBP9.34□□□□□ -0.91
VPS35-211ENST00000569950 TMEM131Q92545 1883 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 DMXL1Q9Y485 3027 aa9.34□□□□□ -0.91
VPS35-211ENST00000569950 GOLGA6L10A0A0M3HER8 536 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CAPN8A6NHC0 703 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 ANKRD66B4E2M5 251 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 WNT9AO14904 365 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 SLC7A4O43246 635 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 RNASEH1O60930 286 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 ZNF217O75362 1048 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 ANXA9O76027 345 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 STK10O94804 968 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 ECEL1O95672 775 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CPP00450 1065 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 PIRTP0C851 137 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CTPS1P17812 591 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 TPSB2P20231 275 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CD6P30203 668 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 FDFT1P37268 417 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 PAFAH1B1P43034 410 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 MAGEA3P43357 314 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 RPL21P46778 160 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 VPS41P49754 854 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 GEMP55040 296 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms