RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PGBD5Q8N414 524 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 DCBLD1Q8N8Z6 715 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 FAM71BQ8TC56 605 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 SAP25Q8TEE9 199 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 SNRNP27Q8WVK2 155 aaKnown RBP14.05□□□□□ -0.16
CLN3-235ENST00000568497 SLC6A18Q96N87 628 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 SMIM14Q96QK8 99 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 FAM118BQ9BPY3 351 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 ORAI3Q9BRQ5 295 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 CEP41Q9BYV8 373 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 IL36AQ9UHA7 158 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 PCDHB1Q9Y5F3 818 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 PLXNA2O75051 1894 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 ARHGAP42A6NI28 874 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 F5H423 210 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 VILLO15195 856 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 YKT6O15498 198 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 RNASEH1O60930 286 aaKnown RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 PALMO75781 387 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 PEX11BO96011 259 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 CKMT2P17540 419 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 EPHA8P29322 1005 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 ABL2P42684 1182 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 ARRB1P49407 418 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 ADPRHP54922 357 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 YBEYP58557 167 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 INSM1Q01101 510 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 ZNF211Q13398 564 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 ACBD5Q5T8D3 534 aaPredicted RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 PIP5KL1Q5T9C9 394 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 AGBL4Q5VU57 503 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 PARS2Q7L3T8 475 aaKnown RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 DAAM2Q86T65 1068 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 ZSWIM9Q86XI8 627 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 PSTKQ8IV42 348 aaKnown RBP14.04□□□□□ -0.16
CLN3-235ENST00000568497 KDM1BQ8NB78 822 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 HIC2Q96JB3 615 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 KLHL32Q96NJ5 620 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 RNF157Q96PX1 679 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 PPP1R9BQ96SB3 815 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 HEMGNQ9BXL5 484 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 FZD3Q9NPG1 666 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 AASDHPPTQ9NRN7 309 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 TMEM51Q9NW97 253 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 ANKMY1Q9P2S6 941 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 HEY1Q9Y5J3 304 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 ADGRG1Q9Y653 693 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 CAPN6Q9Y6Q1 641 aa14.04□□□□□ -0.16
CLN3-235ENST00000568497 A0A0U1RQS6 177 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 MAFKO60675 156 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 MT-CO3P00414 261 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 IGHV4-34P06331 123 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 KRT7P08729 469 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 PECAM1P16284 738 aaPredicted RBP14.03□□□□□ -0.16
CLN3-235ENST00000568497 PRLRP16471 622 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 C5AR1P21730 350 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 ARHGAP25P42331 645 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 RECQLP46063 649 aaPredicted RBP14.03□□□□□ -0.16
CLN3-235ENST00000568497 HCAR3P49019 387 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 IHHQ14623 411 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 TCEAL1Q15170 157 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 SHBQ15464 509 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 MYLK3Q32MK0 819 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 TTC31Q49AM3 519 aaPredicted RBP14.03□□□□□ -0.16
CLN3-235ENST00000568497 SEL1L3Q68CR1 1132 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 ZNF574Q6ZN55 896 aaPredicted RBP14.03□□□□□ -0.16
CLN3-235ENST00000568497 CAMK1DQ8IU85 385 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 LRRC8AQ8IWT6 810 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 LSMEM2Q8N112 164 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 PCDH20Q8N6Y1 951 aaKnown RBP14.03□□□□□ -0.16
CLN3-235ENST00000568497 PLD5Q8N7P1 536 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 OR2AP1Q8NGE2 309 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 NCAPGQ9BPX3 1015 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 HEPHQ9BQS7 1158 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 GDF3Q9NR23 364 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 WDR70Q9NW82 654 aa14.03□□□□□ -0.16
CLN3-235ENST00000568497 ARID1BQ8NFD5 2236 aaPredicted RBP14.03□□□□□ -0.16
CLN3-235ENST00000568497 TBC1D3DA0A087WVF3 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3IA0A087WXS9 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3EA0A087X179 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3KA0A087X1G2 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3FA6NER0 549 aaPredicted RBP14.02□□□□□ -0.17
CLN3-235ENST00000568497 A8MX80 341 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3LB9A6J9 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TERTO14746 1132 aaKnown RBP14.02□□□□□ -0.17
CLN3-235ENST00000568497 PJA2O43164 708 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 SPINT1O43278 529 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 IPO7O95373 1038 aaKnown RBP14.02□□□□□ -0.17
CLN3-235ENST00000568497 ADH1BP00325 375 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3HP0C7X1 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 VASPP50552 380 aaPredicted RBP14.02□□□□□ -0.17
CLN3-235ENST00000568497 CLCN6P51797 869 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 NFKB2Q00653 900 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 ZBTB16Q05516 673 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3GQ6DHY5 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3CQ6IPX1 549 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 SPOCD1Q6ZMY3 1216 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 ATG14Q6ZNE5 492 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 RHOT1Q8IXI2 618 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TBC1D3Q8IZP1 549 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms