RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	COL28A1	Q2UY09	1125 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	KRTAP27-1	Q3LI81	207 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	ODF3L2	Q3SX64	289 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	WASHC2D	Q5SRD0	308 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	NCAPH2	Q6IBW4	605 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	TTI2	Q6NXR4	508 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	CFAP161	Q6P656	301 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	TSSK4	Q6SA08	328 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	KLHL24	Q6TFL4	600 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	CYP20A1	Q6UW02	462 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	PARM1	Q6UWI2	310 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	IKBIP	Q70UQ0	350 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	TRAPPC11	Q7Z392	1133 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	MRPL10	Q7Z7H8	261 aa	Known RBP	4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	RBFA	Q8N0V3	343 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	ZCCHC9	Q8N567	271 aa	Known RBP	4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	FRMD1	Q8N878	549 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	MPLKIP	Q8TAP9	179 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	GPT2	Q8TD30	523 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	PSPC1	Q8WXF1	523 aa	Known RBP	4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	USP6NL	Q92738	828 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	GTF3C6	Q969F1	213 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	SLC25A28	Q96A46	364 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	TIGD1	Q96MW7	591 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	WDFY2	Q96P53	400 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	ISCU	Q9H1K1	167 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	EIF2B3	Q9NR50	452 aa	Known RBP	4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	SIRT3	Q9NTG7	399 aa	Predicted RBP	4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	TERF2IP	Q9NYB0	399 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	HAO1	Q9UJM8	370 aa		4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	FBXO2	Q9UK22	296 aa	Predicted RBP	4.64	□□□□□ -1.67
CHD9-215	ENST00000565442	NOTCH4	Q99466	2003 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	IGLV5-39	A0A0G2JS06	123 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442		H0YGN5	161 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	AP3D1	O14617	1153 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	SEC14L5	O43304	696 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	HNRNPCL1	O60812	293 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	RGS11	O94810	467 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	MLYCD	O95822	493 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	MT-CYB	P00156	380 aa	Predicted RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	ITGAX	P20702	1163 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	DRG2	P55039	364 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	SELENOV	P59797	346 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	CEBPZ	Q03701	1054 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	FAM27E3	Q08E93	113 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	FGFBP1	Q14512	234 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	PTGR1	Q14914	329 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	DUSP6	Q16828	381 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	SOWAHA	Q2M3V2	549 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	ESCO2	Q56NI9	601 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	FAM205BP	Q63HN1	556 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	CTU1	Q7Z7A3	348 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	MMP21	Q8N119	569 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	PARP16	Q8N5Y8	322 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	CREB3L4	Q8TEY5	395 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	SLC35F5	Q8WV83	523 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	NLRP4	Q96MN2	994 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	GFM1	Q96RP9	751 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	FTO	Q9C0B1	505 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	TKTL2	Q9H0I9	626 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	MUC13	Q9H3R2	512 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	KIF9	Q9HAQ2	790 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	BPIFA1	Q9NP55	256 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	SLC6A13	Q9NSD5	602 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	LSM4	Q9Y4Z0	139 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-215	ENST00000565442	A3GALT2	U3KPV4	340 aa		4.63	□□□□□ -1.67
CHD9-215	ENST00000565442		A0A0U1RQF3	1178 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	FAM90A10P	A6NDY2	464 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	GAGE12J	A6NER3	117 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	USP17L23	D6RBM5	183 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	CHL1	O00533	1208 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	KLK8	O60259	260 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	SYF2	O95926	243 aa	Known RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	LDHC	P07864	332 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	FGF2	P09038	288 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	RARG	P13631	454 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	TNFRSF1B	P20333	461 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	SCP2	P22307	547 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	THPO	P40225	353 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	GABRB2	P47870	512 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	PIP4K2A	P48426	406 aa	Predicted RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	THBS3	P49746	956 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	NAP1L1	P55209	391 aa	Known RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	P2RX3	P56373	397 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	PPAT	Q06203	517 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	GOLGA8DP	Q0D2H9	430 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	ITGAD	Q13349	1161 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	GPR18	Q14330	331 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	PRTG	Q2VWP7	1150 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	DPCR1	Q3MIW9	517 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	DCAF12L2	Q5VW00	463 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	FBXO46	Q6PJ61	603 aa	Predicted RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	LCTL	Q6UWM7	567 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	COLCA1	Q6ZS62	124 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	FASTKD5	Q7L8L6	764 aa	Known RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	PALB2	Q86YC2	1186 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	TTC39C	Q8N584	583 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	TEX45	Q8NA69	505 aa		4.62	□□□□□ -1.67

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