RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SLC26A9Q7LBE3 791 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 IRF2BP1Q8IU81 584 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PASD1Q8IV76 773 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PLPP6Q8IY26 295 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF683Q8IZ20 524 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 NRSN1Q8IZ57 195 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 TEX19Q8NA77 164 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PMEPA1Q969W9 287 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PDXPQ96GD0 296 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SLC45A3Q96JT2 553 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 C1orf74Q96LT6 269 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 CCDC74BQ96LY2 380 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 RBM15Q96T37 977 aaKnown RBP eCLIP7.39□□□□□ -1.236e-10■■■■■ 36
VPS4A-203ENST00000564399 NPY6RQ99463 290 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 NUDT22Q9BRQ3 303 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ZYG11BQ9C0D3 744 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 ANLNQ9NQW6 1124 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 RMND1Q9NWS8 449 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SLC39A1Q9NY26 324 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 RRN3Q9NYV6 651 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 MOSPD1Q9UJG1 213 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 STAP1Q9ULZ2 295 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 HPCAL4Q9UM19 191 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 VPS4AQ9UN37 437 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SRPK3Q9UPE1 567 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 CNTN6Q9UQ52 1028 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 DAAM1Q9Y4D1 1078 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 PCDHGA3Q9Y5H0 932 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 BSNQ9UPA5 3926 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 NBPF19A0A087WUL8 3843 aa7.39□□□□□ -1.23
VPS4A-203ENST00000564399 DIDO1Q9BTC0 2240 aaKnown RBP7.39□□□□□ -1.23
VPS4A-203ENST00000564399 SHANK1Q9Y566 2161 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 IGLV3-10A0A075B6K4 115 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 IGHV5-10-1A0A0J9YXX1 117 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 A1L4Q6 167 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 EFCAB7A8K855 629 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 CACNB4O00305 520 aaPredicted RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF202O95125 648 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 CD160O95971 181 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ERBB2P04626 1255 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 TIMP2P16035 220 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 NR1D1P20393 614 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 UQCRFS1P47985 274 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ARSDP51689 593 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 MAZP56270 477 aaKnown RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 LRRC63Q05C16 580 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ELP6Q0PNE2 266 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 CDC20Q12834 499 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 PNOCQ13519 176 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM52BQ4KMG9 183 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 DCAF12Q5T6F0 453 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ACBD5Q5T8D3 534 aaPredicted RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF658Q5TYW1 1059 aaPredicted RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 OTUD1Q5VV17 481 aaPredicted RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 KCTD16Q68DU8 428 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 C16orf46Q6P387 395 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 OLFML1Q6UWY5 402 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 KDELC2Q7Z4H8 507 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 HEATR4Q86WZ0 1026 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 FAM129CQ86XR2 697 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF354CQ86Y25 554 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 WDTC1Q8N5D0 677 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 EFCAB3Q8N7B9 438 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 C1orf131Q8NDD1 294 aaKnown RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 AGBL5Q8NDL9 886 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 OR56A4Q8NGH8 313 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 KIAA1524Q8TCG1 905 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 SSC4DQ8WTU2 575 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 OR1E3Q8WZA6 343 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ARHGEF2Q92974 986 aaKnown RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 GDAP1L1Q96MZ0 367 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 EFHD1Q9BUP0 239 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ASPSCR1Q9BZE9 553 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 ZMYND15Q9H091 742 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 INTS2Q9H0H0 1204 aaKnown RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM168Q9H0V1 697 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 SUDS3Q9H7L9 328 aaPredicted RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 CYP4F12Q9HCS2 524 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 MRPL40Q9NQ50 206 aaKnown RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 TP53TG5Q9Y2B4 290 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 DGKBQ9Y6T7 804 aa7.38□□□□□ -1.23
VPS4A-203ENST00000564399 PRRC2CQ9Y520 2896 aaKnown RBP7.38□□□□□ -1.23
VPS4A-203ENST00000564399 TNRC6AQ8NDV7 1962 aaKnown RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM202A6NGA9 273 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 TTLL8A6PVC2 850 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 MKRN2OSH3BPM6 223 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 PSMA7O14818 248 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 BUB1O43683 1085 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 IGSF6O95976 241 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 TCN2P20062 427 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 GNLYP22749 145 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 KELP23276 732 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 MPSTP25325 297 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 OAS2P29728 719 aaKnown RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 NOP2P46087 812 aaKnown RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 COPB1P53618 953 aaKnown RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 LIMK2P53671 638 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 RHOAP61586 193 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 MC1RQ01726 317 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms