RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	SSTR3	P32745	418 aa	Predicted RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PNPLA4	P41247	253 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	DPP6	P42658	865 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	FAM189B	P81408	668 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PMS2P3	Q13401	168 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TRIM25	Q14258	630 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ZNF846	Q147U1	533 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TPSAB1	Q15661	275 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	SV2C	Q496J9	727 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	INTS11	Q5TA45	600 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	GPR107	Q5VW38	600 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	FAM117B	Q6P1L5	589 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TRMT10B	Q6PF06	316 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	IGFN1	Q86VF2	1251 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ABI1	Q8IZP0	508 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ZNF786	Q8N393	782 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LRTOMT	Q8WZ04	291 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	OR52B2	Q96RD2	323 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	SLC29A1	Q99808	456 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PAAF1	Q9BRP4	392 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	MAGEE1	Q9HCI5	957 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CD320	Q9NPF0	282 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	MRGBP	Q9NV56	204 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	HMGXB4	Q9UGU5	601 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CPNE6	O95741	557 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	POLR2E	P19388	210 aa	Known RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	IGFBP6	P24592	240 aa	Predicted RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	GATM	P50440	423 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	LILRA4	P59901	499 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	PSMC1	P62191	440 aa	Known RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	NIPAL4	Q0D2K0	466 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	TUBA3C	Q13748	450 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	PTK2B	Q14289	1009 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	KCNJ8	Q15842	424 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	PAN2	Q504Q3	1202 aa	Known RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	MTX3	Q5HYI7	312 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	NOMO2	Q5JPE7	1267 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	TMEM214	Q6NUQ4	689 aa	Known RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	CNKSR3	Q6P9H4	555 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	ZBTB49	Q6ZSB9	765 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	TMEM26	Q6ZUK4	368 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	UNC5B	Q8IZJ1	945 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	TTC30B	Q8N4P2	665 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	ZNF781	Q8N8C0	355 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	TDRD5	Q8NAT2	981 aa	Known RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	KCTD6	Q8NC69	237 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	URGCP	Q8TCY9	931 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	MAPK15	Q8TD08	544 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	HASPIN	Q8TF76	798 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	PBXIP1	Q96AQ6	731 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	ALPK1	Q96QP1	1244 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	ZNF347	Q96SE7	839 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	GPN2	Q9H9Y4	310 aa	Predicted RBP	11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	CYP3A43	Q9HB55	503 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	DAPK2	Q9UIK4	370 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	IFT52	Q9Y366	437 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	CORIN	Q9Y5Q5	1042 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	NOX1	Q9Y5S8	564 aa		11.14	□□□□□ -0.63
TCF4-222	ENST00000564228	SLCO1B7	G3V0H7	640 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	TMX2-CTNND1	H3BSU7	103 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228		J3QRK9	145 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	KIAA0355	O15063	1070 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	HDAC3	O15379	428 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	CFLAR	O15519	480 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	NDUFB5	O43674	189 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	DGKI	O75912	1065 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ENDOD1	O94919	500 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	BCL10	O95999	233 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	CD19	P15391	556 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	JUNB	P17275	347 aa	Predicted RBP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	RFC2	P35250	354 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ITGAD	Q13349	1161 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	TUSC3	Q13454	348 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	SOWAHA	Q2M3V2	549 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	SMTNL2	Q2TAL5	461 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	PPM1L	Q5SGD2	360 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	UBE2Q1	Q7Z7E8	422 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ZNF280B	Q86YH2	543 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	HERC6	Q8IVU3	1022 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	CPNE9	Q8IYJ1	553 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ARFGAP1	Q8N6T3	406 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	C3orf58	Q8NDZ4	430 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	CDKL2	Q92772	493 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	USP13	Q92995	863 aa	Predicted RBP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ISL2	Q96A47	359 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	FBXL8	Q96CD0	374 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	TWNK	Q96RR1	684 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	TCF12	Q99081	682 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	MRPL45	Q9BRJ2	306 aa	Known RBP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ELAC1	Q9H777	363 aa	Known RBP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ZBTB26	Q9HCK0	441 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	VTI1B	Q9UEU0	232 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	MID2	Q9UJV3	735 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	SARDH	Q9UL12	918 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	CNOT6	Q9ULM6	557 aa	Known RBP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	PCDHGC3	Q9UN70	934 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	TSC2	P49815	1807 aa		11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	BCLAF3	A2AJT9	711 aa	Known RBP	11.13	□□□□□ -0.63
TCF4-222	ENST00000564228	ZNF839	A8K0R7	811 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms