RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TP53INP2Q8IXH6 220 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 MDM1Q8TC05 714 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 LMX1AQ8TE12 382 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 IL12RB2Q99665 862 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 USP29Q9HBJ7 922 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 MBNL1Q9NR56 388 aaKnown RBP16.97■□□□□ 0.31
CLK3-210ENST00000563112 NCKIPSDQ9NZQ3 722 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 COQ6Q9Y2Z9 468 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 DMXL2Q8TDJ6 3036 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 A0A1W2PQ67 120 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 K7ESM1 405 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 AKR1B10O60218 316 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 CKMT1AP12532 417 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 NFKBIAP25963 317 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 HTR1BP28222 390 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 MMP12P39900 470 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 PEX5P50542 639 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 BLKP51451 505 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 EIF2B5Q13144 721 aaKnown RBP16.96■□□□□ 0.31
CLK3-210ENST00000563112 CAMK2BQ13554 666 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 IRF4Q15306 451 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 TPRG1LQ5T0D9 272 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 FAXCQ5TGI0 409 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 MACC1Q6ZN28 852 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 LRRC49Q8IUZ0 686 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 MAP7D3Q8IWC1 876 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 FAM181AQ8N9Y4 354 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 KCTD6Q8NC69 237 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 ECHDC3Q96DC8 303 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 APOLD1Q96LR9 279 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 DNAJC7Q99615 494 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 SLC13A1Q9BZW2 595 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 SCUBE2Q9NQ36 999 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 DKK4Q9UBT3 224 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 APOBEC3BQ9UH17 382 aaKnown RBP16.96■□□□□ 0.31
CLK3-210ENST00000563112 NENFQ9UMX5 172 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 ASPMQ8IZT6 3477 aa16.96■□□□□ 0.31
CLK3-210ENST00000563112 APC2O95996 2303 aa16.96■□□□□ 0.3
CLK3-210ENST00000563112 ANKRD36A6QL64 1941 aa16.96■□□□□ 0.3
CLK3-210ENST00000563112 FAM208BQ5VWN6 2430 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 SSU72P8A0A1W2PR75 194 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 TAF4O00268 1085 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 MUSKO15146 869 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 MAFKO60675 156 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 NEBLO76041 1014 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 PROSCO94903 275 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 PRKCGP05129 697 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 GIMD1P0DJR0 217 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 GJC1P36383 396 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 PPARDQ03181 441 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 CYP4F3Q08477 520 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 TARDBPQ13148 414 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLK3-210ENST00000563112 AGERQ15109 404 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 WSCD2Q2TBF2 565 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 MARC1Q5VT66 337 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 ZCCHC8Q6NZY4 707 aaKnown RBP16.95■□□□□ 0.3
CLK3-210ENST00000563112 KDM7AQ6ZMT4 941 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 ZSWIM9Q86XI8 627 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 VSTM4Q8IW00 320 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 PHACTR4Q8IZ21 702 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 CACTIN-AS1Q8N1I8 211 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 ATL2Q8NHH9 583 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 GLMNQ92990 594 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 NUDCD1Q96RS6 583 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 KLF15Q9UIH9 416 aa16.95■□□□□ 0.3
CLK3-210ENST00000563112 TPP1O14773 563 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 SOCS5O75159 536 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 ANXA6P08133 673 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 KRT7P08729 469 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 ELFN1P0C7U0 828 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 MMP13P45452 471 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 CLDN6P56747 220 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 SEMG2Q02383 582 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 MTM1Q13496 603 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 PDK2Q15119 407 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 PRRT3Q5FWE3 981 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 RALGPS1Q5JS13 557 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 ZFYVE27Q5T4F4 411 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 DPPA4Q7L190 304 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 RBFAQ8N0V3 343 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 RNF214Q8ND24 703 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 FAM71BQ8TC56 605 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 PDCD6IPQ8WUM4 868 aaKnown RBP16.94■□□□□ 0.3
CLK3-210ENST00000563112 RFFLQ8WZ73 363 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 NXPE2Q96DL1 559 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 TBATAQ96M53 351 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 CCDC42Q96M95 316 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 APOOQ9BUR5 198 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 ABCG4Q9H172 646 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 CAAP1Q9H8G2 361 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 SALL4Q9UJQ4 1053 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 CLCA2Q9UQC9 943 aa16.94■□□□□ 0.3
CLK3-210ENST00000563112 SPEGQ15772 3267 aa16.93■□□□□ 0.3
CLK3-210ENST00000563112 LRRK1Q38SD2 2015 aa16.93■□□□□ 0.3
CLK3-210ENST00000563112 TRAFD1O14545 582 aaPredicted RBP16.93■□□□□ 0.3
CLK3-210ENST00000563112 PEX11BO96011 259 aa16.93■□□□□ 0.3
CLK3-210ENST00000563112 PCCBP05166 539 aa16.93■□□□□ 0.3
CLK3-210ENST00000563112 GP1BAP07359 652 aa16.93■□□□□ 0.3
CLK3-210ENST00000563112 TMEM253P0C7T8 217 aa16.93■□□□□ 0.3
CLK3-210ENST00000563112 IL4RP24394 825 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms