RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NUP85Q9BW27 656 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLK3-205ENST00000561673 CLCA2Q9UQC9 943 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 LUC7L2Q9Y383 392 aaKnown RBP10.37□□□□□ -0.75
CLK3-205ENST00000561673 CSNK1G3Q9Y6M4 447 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 ARID1BQ8NFD5 2236 aaPredicted RBP10.37□□□□□ -0.75
CLK3-205ENST00000561673 TTC24A2A3L6 582 aaPredicted RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 TRAFD1O14545 582 aaPredicted RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 TOR1BO14657 336 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 OPA1O60313 960 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 PEX11BO96011 259 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 MT-CO3P00414 261 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 IL4RP24394 825 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 SERPINA4P29622 427 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 CASP14P31944 242 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 MMP12P39900 470 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 ARL4AP40617 200 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 MLLT3P42568 568 aaPredicted RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 PEX5P50542 639 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 DUSP3P51452 185 aaPredicted RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 ADKP55263 362 aaKnown RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 SLC25A11Q02978 314 aaKnown RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 BCL2L1Q07817 233 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 SLC10A7Q0GE19 358 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 C1orf61Q13536 156 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 INPP5AQ14642 412 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 LBRQ14739 615 aaKnown RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 PRRT3Q5FWE3 981 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 CCDC122Q5T0U0 273 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 FAXCQ5TGI0 409 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 ZCCHC8Q6NZY4 707 aaKnown RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 TMCO3Q6UWJ1 677 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 MACC1Q6ZN28 852 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 RBFAQ8N0V3 343 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 BTN2A2Q8WVV5 523 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 HNRNPLLQ8WVV9 542 aaKnown RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 TEKT4Q8WW24 435 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 ECHDC3Q96DC8 303 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 ZNF599Q96NL3 588 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 PSKH2Q96QS6 385 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 SLC13A1Q9BZW2 595 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 NRSN2Q9GZP1 204 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 USP29Q9HBJ7 922 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 SPASTQ9UBP0 616 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 SEPT3Q9UH03 358 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 APOBEC3BQ9UH17 382 aaKnown RBP10.36□□□□□ -0.75
CLK3-205ENST00000561673 IP6K2Q9UHH9 426 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 ANAPC7Q9UJX3 599 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 LHX6Q9UPM6 363 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 ATP8A1Q9Y2Q0 1164 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 AK5Q9Y6K8 562 aa10.36□□□□□ -0.75
CLK3-205ENST00000561673 TMEM110-MUSTN1A8MSY1 372 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 A8MX80 341 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 MYO1FO00160 1098 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 TPP1O14773 563 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 LZTS3O60299 673 aaPredicted RBP10.35□□□□□ -0.75
CLK3-205ENST00000561673 MAFKO60675 156 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 GP1BAP07359 652 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 RENBPP51606 427 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 POLR2LP62875 67 aaKnown RBP10.35□□□□□ -0.75
CLK3-205ENST00000561673 PPARDQ03181 441 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 RTP5Q14D33 572 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 AGERQ15109 404 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 CDKN3Q16667 212 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 TMCO4Q5TGY1 634 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 CDCP2Q5VXM1 449 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 PHACTR4Q8IZ21 702 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 PGBD5Q8N414 524 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 IFI44Q8TCB0 444 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 TSACCQ96A04 125 aaPredicted RBP10.35□□□□□ -0.75
CLK3-205ENST00000561673 NXPE2Q96DL1 559 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 IL12RB2Q99665 862 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 APOOQ9BUR5 198 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 LRRC61Q9BV99 259 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 BOCQ9BWV1 1114 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 XPO4Q9C0E2 1151 aaKnown RBP10.35□□□□□ -0.75
CLK3-205ENST00000561673 CLPBQ9H078 707 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 ABCG4Q9H172 646 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 NOD2Q9HC29 1040 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 PCDH18Q9HCL0 1135 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 SALL4Q9UJQ4 1053 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 NENFQ9UMX5 172 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 OR1A2Q9Y585 309 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 GOLGA4Q13439 2230 aaKnown RBP10.35□□□□□ -0.75
CLK3-205ENST00000561673 ZFYVE26Q68DK2 2539 aa10.35□□□□□ -0.75
CLK3-205ENST00000561673 A0A087WV48 116 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 CPED1A4D0V7 1026 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 EME2A4GXA9 379 aaPredicted RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 CFAP69A5D8W1 941 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 LMO7DNF2Z398 122 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 YY2O15391 372 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 HTRA2O43464 458 aaPredicted RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 RECQL5O94762 991 aaPredicted RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 PCCBP05166 539 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 CELA2BP08218 269 aaPredicted RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 CD48P09326 243 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 TSHRP16473 764 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 GM2AP17900 193 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 CR2P20023 1033 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 PTMSP20962 102 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms