RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PRAMEP78395 509 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 TRAF2Q12933 501 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 IFT88Q13099 833 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 TAF1AQ15573 450 aaPredicted RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 SRLQ86TD4 932 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 RNF135Q8IUD6 432 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 CILP2Q8IUL8 1156 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 SCG3Q8WXD2 468 aaKnown RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 HDAC10Q969S8 669 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 LMAN2LQ9H0V9 348 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 CAB39LQ9H9S4 337 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 NLE1Q9NVX2 485 aaPredicted RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 SLC39A10Q9ULF5 831 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 YBX2Q9Y2T7 364 aaKnown RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 KCTD3Q9Y597 815 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 PCDHGC4Q9Y5F7 938 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 SPO11Q9Y5K1 396 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 ARL5AQ9Y689 179 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 FAM95CA0A1B0GW59 222 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 ANKRD66B4E2M5 251 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 HAUS5O94927 633 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 TGDSO95455 350 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 COL6A2P12110 1019 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 MAGEA10P43363 369 aaPredicted RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 CLCN5P51795 746 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 POU4F1Q01851 419 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 USP10Q14694 798 aaKnown RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 DLG2Q15700 870 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 PITRM1Q5JRX3 1037 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 ATG16L1Q676U5 607 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 C16orf46Q6P387 395 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 ADGRD2Q7Z7M1 963 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 TMEM25Q86YD3 366 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 NUDCD3Q8IVD9 361 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 MFSD6LQ8IWD5 586 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 CCDC63Q8NA47 563 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 IRF7Q92985 503 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 RMDN1Q96DB5 314 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 DNAJC1Q96KC8 554 aaKnown RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 TBATAQ96M53 351 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 MARK1Q9P0L2 795 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 TMEM216Q9P0N5 145 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 KLHL14Q9P2G3 628 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 DENND4CQ5VZ89 1909 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 K7ERQ8 282 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 CEBPBP17676 345 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 CRABP2P29373 138 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 HLA-FP30511 346 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 RAB10P61026 200 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 RPL26P61254 145 aaKnown RBP12.96□□□□□ -0.33
SNX1-211ENST00000560829 DUSP6Q16828 381 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 PLD6Q8N2A8 252 aaKnown RBP12.96□□□□□ -0.33
SNX1-211ENST00000560829 LPCAT1Q8NF37 534 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 MDGA1Q8NFP4 955 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 OR6P1Q8NGX9 317 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 ZNF398Q8TD17 642 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 CCT6BQ92526 530 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 E2F7Q96AV8 911 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 ISG20Q96AZ6 181 aaKnown RBP12.96□□□□□ -0.33
SNX1-211ENST00000560829 ZSWIM3Q96MP5 696 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 C7orf26Q96N11 449 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 MECRQ9BV79 373 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 TSSK1BQ9BXA7 367 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 C1QTNF1Q9BXJ1 281 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 SPHK2Q9NRA0 654 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 HACD3Q9P035 362 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 TLK1Q9UKI8 766 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 RPL26L1Q9UNX3 145 aaKnown RBP12.96□□□□□ -0.33
SNX1-211ENST00000560829 HS3ST2Q9Y278 367 aa12.96□□□□□ -0.33
SNX1-211ENST00000560829 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 CCT8L1PA6NM43 557 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 SMAD6O43541 496 aaKnown RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 ZNF821O75541 412 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 KIAA0754O94854 1291 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 S1PR4O95977 384 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 GOT2P00505 430 aaKnown RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 PIRTP0C851 137 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 SLC35E2BP0CK96 405 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 NEFHP12036 1026 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 STMN1P16949 149 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 OGNP20774 298 aaKnown RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 GRIA4P48058 902 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 KCNC3Q14003 757 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 PCLAFQ15004 111 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 TAF1BQ53T94 588 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 ATXN7L2Q5T6C5 722 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 ZNF697Q5TEC3 545 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 MBLAC2Q68D91 279 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 GLT6D1Q7Z4J2 308 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 PTAR1Q7Z6K3 402 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 ARID3BQ8IVW6 561 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 OR13C4Q8NGS5 318 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 CDKN2AIPNLQ96HQ2 116 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 FBXO6Q9NRD1 293 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 MARCH4Q9P2E8 410 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 COPG2Q9UBF2 871 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 CORO1CQ9ULV4 474 aaPredicted RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 MRPS23Q9Y3D9 190 aaKnown RBP12.95□□□□□ -0.34
SNX1-211ENST00000560829 CHD7Q9P2D1 2997 aa12.95□□□□□ -0.34
SNX1-211ENST00000560829 MTCL1Q9Y4B5 1905 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms