RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 RBL1P28749 1068 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 HLA-FP30511 346 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 SLC7A5Q01650 507 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 GPS1Q13098 491 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 CAMK2BQ13554 666 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 CAMK2GQ13555 558 aaPredicted RBP11.94□□□□□ -0.5
LDLR-212ENST00000560467 E2F5Q15329 346 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 TRIP13Q15645 432 aaPredicted RBP11.94□□□□□ -0.5
LDLR-212ENST00000560467 ALFQ53S48 1182 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 MARC1Q5VT66 337 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 RNF219Q5W0B1 726 aaPredicted RBP11.94□□□□□ -0.5
LDLR-212ENST00000560467 RETSATQ6NUM9 610 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 PID1Q7Z2X4 250 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 EIF1ADQ8N9N8 165 aaKnown RBP11.94□□□□□ -0.5
LDLR-212ENST00000560467 SNF8Q96H20 258 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 ZNF599Q96NL3 588 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 OLFM3Q96PB7 478 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 LGMNQ99538 433 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 SLC2A11Q9BYW1 496 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 TRIM31Q9BZY9 425 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 SLC39A8Q9C0K1 460 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 PCED1AQ9H1Q7 454 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 ATP13A1Q9HD20 1204 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 DKK4Q9UBT3 224 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 ANAPC5Q9UJX4 755 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 VPS28Q9UK41 221 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 ANKRD6Q9Y2G4 727 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 TBC1D30Q9Y2I9 924 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 CEP192Q8TEP8 1941 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 GOLGA4Q13439 2230 aaKnown RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 H0Y8X5 98 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 RNF103O00237 685 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 MATN3O15232 486 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 PSMD3O43242 534 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 TIMM44O43615 452 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 MAP3K6O95382 1288 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 CCNB1P14635 433 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 PTGIRP43119 386 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 GRK6P43250 576 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 GRIA4P48058 902 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 VPS41P49754 854 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 CCT8P50990 548 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 SGSHP51688 502 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 RPS14P62263 151 aaKnown RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 IL10RBQ08334 325 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 SLC20A2Q08357 652 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 ITKQ08881 620 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 SLC10A2Q12908 348 aaPredicted RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 RFTN1Q14699 578 aaPredicted RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 SUZ12Q15022 739 aaKnown RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 PRKD1Q15139 912 aaPredicted RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 TEAD4Q15561 434 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 PTPRNQ16849 979 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 DHRS13Q6UX07 377 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 PPP1R21Q6ZMI0 780 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 CIR1Q86X95 450 aaPredicted RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 FIBINQ8TAL6 211 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 FATE1Q969F0 183 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 BIRC7Q96CA5 298 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 ORAI3Q9BRQ5 295 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 DPH5Q9H2P9 285 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 TMEM245Q9H330 911 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 MTG2Q9H4K7 406 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 ABCB8Q9NUT2 735 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 WHRNQ9P202 907 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 TPX2Q9ULW0 747 aaKnown RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 SNX24Q9Y343 169 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 HELZ2Q9BYK8 2649 aaKnown RBP11.93□□□□□ -0.5
LDLR-212ENST00000560467 PLXNB3Q9ULL4 1909 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 NUMA1Q14980 2115 aa11.93□□□□□ -0.5
LDLR-212ENST00000560467 CBX4O00257 560 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 TNFSF14O43557 240 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 KDELR3O43731 214 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 ZIC2O95409 532 aaPredicted RBP11.92□□□□□ -0.5
LDLR-212ENST00000560467 JCHAINP01591 159 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 CES1P23141 567 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 FDFT1P37268 417 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 NNMTP40261 264 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 CLDN6P56747 220 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 SULT2A1Q06520 285 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 SERINC3Q13530 473 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 ZNF235Q14590 738 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 BRD3Q15059 726 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 SMAD1Q15797 465 aaKnown RBP11.92□□□□□ -0.5
LDLR-212ENST00000560467 PARP6Q2NL67 630 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 AFMIDQ63HM1 303 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 WDR93Q6P2C0 686 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 ADIPOR2Q86V24 386 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 GALNT15Q8N3T1 639 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 NPWQ8N729 165 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 LRRN4CLQ8ND94 238 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 WFDC5Q8TCV5 224 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 WFIKKN2Q8TEU8 576 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 CASKIN2Q8WXE0 1202 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 RTP4Q96DX8 246 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 HMCESQ96FZ2 354 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 PRICKLE1Q96MT3 831 aaPredicted RBP11.92□□□□□ -0.5
LDLR-212ENST00000560467 SPATA13Q96N96 652 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 PARD6BQ9BYG5 372 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 FRMD8Q9BZ67 464 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms