RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RIOK3O14730 519 aaKnown RBP21.9■■□□□ 1.1
SNX1-210ENST00000560260 RNGTTO60942 597 aaKnown RBP21.9■■□□□ 1.1
SNX1-210ENST00000560260 ALPIP09923 528 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 CTPS1P17812 591 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 RPL22P35268 128 aaKnown RBP21.9■■□□□ 1.1
SNX1-210ENST00000560260 QPCTQ16769 361 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 SEL1L3Q68CR1 1132 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 KIAA0895LQ68EN5 471 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 LPCAT2Q7L5N7 544 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 PAF1Q8N7H5 531 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 SUMF1Q8NBK3 374 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 CADM4Q8NFZ8 388 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 ZNF592Q92610 1267 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 MCCC1Q96RQ3 725 aaPredicted RBP21.9■■□□□ 1.1
SNX1-210ENST00000560260 ORAI3Q9BRQ5 295 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 EBF2Q9HAK2 575 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 VPS45Q9NRW7 570 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 PHTF1Q9UMS5 762 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.9■■□□□ 1.1
SNX1-210ENST00000560260 SLCO1B1Q9Y6L6 691 aa21.9■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3DA0A087WVF3 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3IA0A087WXS9 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3EA0A087X179 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3KA0A087X1G2 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 GOLGA6L10A0A0M3HER8 536 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 A0A0U1RQS6 177 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 A0A1W2PQ67 120 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 A0A1W2PQU0 124 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3FA6NER0 549 aaPredicted RBP21.89■■□□□ 1.1
SNX1-210ENST00000560260 METTL12A8MUP2 240 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3LB9A6J9 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 FSBPO95073 299 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 ATXN1LP0C7T5 689 aaKnown RBP21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3HP0C7X1 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 XPAP23025 273 aaPredicted RBP21.89■■□□□ 1.1
SNX1-210ENST00000560260 DEKP35659 375 aaKnown RBP21.89■■□□□ 1.1
SNX1-210ENST00000560260 CHRNA4P43681 627 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 FNTAP49354 379 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 GEMP55040 296 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 CDK18Q07002 472 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 CCDC15Q0P6D6 951 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 PARP6Q2NL67 630 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TMEM52BQ4KMG9 183 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TMEM259Q4ZIN3 620 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3GQ6DHY5 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3CQ6IPX1 549 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 CCDC137Q6PK04 289 aaKnown RBP21.89■■□□□ 1.1
SNX1-210ENST00000560260 DPPA4Q7L190 304 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 TBC1D3Q8IZP1 549 aaPredicted RBP21.89■■□□□ 1.1
SNX1-210ENST00000560260 CCDC89Q8N998 374 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 IPMKQ8NFU5 416 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 ATL2Q8NHH9 583 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 BIRC7Q96CA5 298 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 PCED1AQ9H1Q7 454 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 RNF14Q9UBS8 474 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 PPIL1Q9Y3C6 166 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 NEU2Q9Y3R4 380 aa21.89■■□□□ 1.1
SNX1-210ENST00000560260 LRRK1Q38SD2 2015 aa21.89■■□□□ 1.09
SNX1-210ENST00000560260 PLXNA2O75051 1894 aa21.89■■□□□ 1.09
SNX1-210ENST00000560260 GPR179Q6PRD1 2367 aa21.89■■□□□ 1.09
SNX1-210ENST00000560260 DOCK9Q9BZ29 2069 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 A0A0J9YYE9 177 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 LOC285095A0A1B0GVY8 99 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 NPIPB15A6NHN6 443 aaPredicted RBP21.88■■□□□ 1.09
SNX1-210ENST00000560260 KIF2AO00139 706 aaPredicted RBP21.88■■□□□ 1.09
SNX1-210ENST00000560260 PCDH8O95206 1070 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 TRBC1P01850 177 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 CA4P22748 312 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 LHCGRP22888 699 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 MAT2AP31153 395 aaKnown RBP21.88■■□□□ 1.09
SNX1-210ENST00000560260 ADRA1AP35348 466 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 DHPSP49366 369 aaPredicted RBP21.88■■□□□ 1.09
SNX1-210ENST00000560260 SUOXP51687 545 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 NHLH1Q02575 133 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 MPP3Q13368 585 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 FGL2Q14314 439 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 ELF2Q15723 593 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 ZNF284Q2VY69 593 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 KCTD11Q693B1 232 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 TSPAN33Q86UF1 283 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 TRIM69Q86WT6 500 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 FEM1CQ96JP0 617 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 WRAP53Q9BUR4 548 aaKnown RBP21.88■■□□□ 1.09
SNX1-210ENST00000560260 FICDQ9BVA6 458 aa21.88■■□□□ 1.09
SNX1-210ENST00000560260 ATXN2Q99700 1313 aaKnown RBP21.88■■□□□ 1.09
SNX1-210ENST00000560260 CAPN8A6NHC0 703 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 A8MX80 341 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 LATO43561 262 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 ANXA9O76027 345 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 URI1O94763 535 aaPredicted RBP21.87■■□□□ 1.09
SNX1-210ENST00000560260 NDST3O95803 873 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 GM2AP17900 193 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 PAFAH1B1P43034 410 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 CCR5P51681 352 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 RPL26P61254 145 aaKnown RBP21.87■■□□□ 1.09
SNX1-210ENST00000560260 POLR2LP62875 67 aaKnown RBP21.87■■□□□ 1.09
SNX1-210ENST00000560260 FAM193AP78312 1265 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 ELP6Q0PNE2 266 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 SPARCL1Q14515 664 aa21.87■■□□□ 1.09
SNX1-210ENST00000560260 TRIP13Q15645 432 aaPredicted RBP21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms