RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 RABGEF1Q9UJ41 708 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 SIK3Q9Y2K2 1263 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 COQ6Q9Y2Z9 468 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 TCRBV5S1A1TA0A578 114 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 SIGLEC16A6NMB1 481 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 J3QKU1 62 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 FGF10O15520 208 aaPredicted RBP13.21□□□□□ -0.29
TPM1-220ENST00000559556 CCP110O43303 1012 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 TNFSF15O95150 251 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 RASGRP1O95267 797 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 PIGNO95427 931 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 C6P13671 934 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 ZNF143P52747 638 aaPredicted RBP13.21□□□□□ -0.29
TPM1-220ENST00000559556 EIF3IQ13347 325 aaKnown RBP13.21□□□□□ -0.29
TPM1-220ENST00000559556 LY6DQ14210 128 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 NFATC4Q14934 902 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 KRT31Q15323 416 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 UGP2Q16851 508 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 WSCD2Q2TBF2 565 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 FOXR1Q6PIV2 292 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 B3GNT8Q7Z7M8 397 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 HID1Q8IV36 788 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 NETO2Q8NC67 525 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 SCG3Q8WXD2 468 aaKnown RBP13.21□□□□□ -0.29
TPM1-220ENST00000559556 TSACCQ96A04 125 aaPredicted RBP13.21□□□□□ -0.29
TPM1-220ENST00000559556 CCDC74AQ96AQ1 378 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 NCAPGQ9BPX3 1015 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 APOOQ9BUR5 198 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 EDEM3Q9BZQ6 932 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 VPS16Q9H269 839 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 CATSPERBQ9H7T0 1116 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 PDFQ9HBH1 243 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 PCDH12Q9NPG4 1184 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 ACSL6Q9UKU0 697 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 FZD10Q9ULW2 581 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 DOLKQ9UPQ8 538 aa13.21□□□□□ -0.29
TPM1-220ENST00000559556 UTP20O75691 2785 aaKnown RBP13.21□□□□□ -0.29
TPM1-220ENST00000559556 PLD2O14939 933 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 CTSEP14091 401 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 XPAP23025 273 aaPredicted RBP13.2□□□□□ -0.3
TPM1-220ENST00000559556 HTR1BP28222 390 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 HTR7P34969 479 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 STAT1P42224 750 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 MTM1Q13496 603 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 CYTH1Q15438 398 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 PPP1R15BQ5SWA1 713 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 BRAT1Q6PJG6 821 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 GKN2Q86XP6 184 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 OR6C4Q8NGE1 309 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 ENOX1Q8TC92 643 aaKnown RBP13.2□□□□□ -0.3
TPM1-220ENST00000559556 MED8Q96G25 268 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 PDXPQ96GD0 296 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 ZNF641Q96N77 438 aaPredicted RBP13.2□□□□□ -0.3
TPM1-220ENST00000559556 GFM1Q96RP9 751 aaKnown RBP13.2□□□□□ -0.3
TPM1-220ENST00000559556 RBM15Q96T37 977 aaKnown RBP eCLIP13.2□□□□□ -0.32e-7■■□□□ 13.8
TPM1-220ENST00000559556 CNPY3Q9BT09 278 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 SUV39H2Q9H5I1 410 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 LRRC19Q9H756 370 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 SYNDIG1Q9H7V2 258 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 SIRPGQ9P1W8 387 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 UBA2Q9UBT2 640 aaPredicted RBP13.2□□□□□ -0.3
TPM1-220ENST00000559556 KLQ9UEF7 1012 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 ATXN7L1Q9ULK2 861 aaPredicted RBP13.2□□□□□ -0.3
TPM1-220ENST00000559556 PCDHGA7Q9Y5G6 932 aa13.2□□□□□ -0.3
TPM1-220ENST00000559556 A0A1W2PQM1 296 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 ANKRD62A6NC57 917 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 TMX2-CTNND1H3BSU7 103 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 CREB3O43889 395 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 TPM2P07951 284 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 CCKBRP32239 447 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 LIG3P49916 1009 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 NDST2P52849 883 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 SRP54P61011 504 aaKnown RBP13.19□□□□□ -0.3
TPM1-220ENST00000559556 RPL7AP62424 266 aaKnown RBP13.19□□□□□ -0.3
TPM1-220ENST00000559556 INPP5AQ14642 412 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 FKBP15Q5T1M5 1219 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 KIAA1614Q5VZ46 1190 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 ERAP2Q6P179 960 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 DNAJC24Q6P3W2 148 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 SCYL2Q6P3W7 929 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 ENPP7Q6UWV6 458 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 CCDC81Q6ZN84 652 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 ZSWIM9Q86XI8 627 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 GPR156Q8NFN8 814 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 ATL2Q8NHH9 583 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 WDR92Q96MX6 357 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 MCEEQ96PE7 176 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 TUBGCP5Q96RT8 1024 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 CCNL2Q96S94 520 aaPredicted RBP13.19□□□□□ -0.3
TPM1-220ENST00000559556 STRADBQ9C0K7 418 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 EPB41L5Q9HCM4 733 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 GULP1Q9UBP9 304 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 GPR34Q9UPC5 381 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 ATP8A1Q9Y2Q0 1164 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 OR1A2Q9Y585 309 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 DGKBQ9Y6T7 804 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 SPENQ96T58 3664 aaKnown RBP13.19□□□□□ -0.3
TPM1-220ENST00000559556 RELNP78509 3460 aa13.19□□□□□ -0.3
TPM1-220ENST00000559556 USP9XQ93008 2570 aaPredicted RBP13.19□□□□□ -0.3
TPM1-220ENST00000559556 CFAP69A5D8W1 941 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms