RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FRMD8Q9BZ67 464 aaPredicted RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 PCED1AQ9H1Q7 454 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 L2HGDHQ9H9P8 463 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 EIF2B3Q9NR50 452 aaKnown RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 ZSCAN32Q9NX65 697 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 KCTD5Q9NXV2 234 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 HACD3Q9P035 362 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 USP36Q9P275 1121 aaKnown RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 SARDHQ9UL12 918 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 CHKBQ9Y259 395 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 LOC285095A0A1B0GVY8 99 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 TTC24A2A3L6 582 aaPredicted RBP9.29□□□□□ -0.92
LDLR-210ENST00000559340 EFCAB8A8MWE9 144 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ANKRD66B4E2M5 251 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 PROB1E7EW31 1015 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 TRAFD1O14545 582 aaPredicted RBP9.29□□□□□ -0.92
LDLR-210ENST00000559340 METTL18O95568 372 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 AP2A1O95782 977 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 MT-CYBP00156 380 aaPredicted RBP9.29□□□□□ -0.92
LDLR-210ENST00000559340 APRTP07741 180 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ZSCAN5DPP0CG00 497 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ADRB3P13945 408 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ITIH2P19823 946 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 TPSB2P20231 275 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 CD6P30203 668 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 P2RY2P41231 377 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 PTGIRP43119 386 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 GRIA4P48058 902 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 VPS41P49754 854 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 CNTN1Q12860 1018 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 CALCOCO2Q13137 446 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ARHGEF7Q14155 803 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ANGPT1Q15389 498 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 TPSAB1Q15661 275 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 PCSK7Q16549 785 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 KDELC1Q6UW63 502 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 KLHDC8BQ8IXV7 354 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 PPIL6Q8IXY8 311 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 RAVER1Q8IY67 606 aaKnown RBP9.29□□□□□ -0.92
LDLR-210ENST00000559340 PDCD7Q8N8D1 485 aaKnown RBP9.29□□□□□ -0.92
LDLR-210ENST00000559340 LPCAT1Q8NF37 534 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 OR2T34Q8NGX1 318 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 OR14C36Q8NHC7 312 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 SPATA22Q8NHS9 363 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ARRDC3Q96B67 414 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ERLEC1Q96DZ1 483 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 SCRN2Q96FV2 425 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 TBL1YQ9BQ87 522 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 ERP44Q9BS26 406 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 FICDQ9BVA6 458 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 CARD6Q9BX69 1037 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 NEUROG2Q9H2A3 272 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 TRABDQ9H4I3 376 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 PREBQ9HCU5 417 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 RAD18Q9NS91 495 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 UBP1Q9NZI7 540 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 PPIL1Q9Y3C6 166 aa9.29□□□□□ -0.92
LDLR-210ENST00000559340 CACNA1HO95180 2353 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3DA0A087WVF3 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3IA0A087WXS9 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3EA0A087X179 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3KA0A087X1G2 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 A0A0J9YYE9 177 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3FA6NER0 549 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3LB9A6J9 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 DNALI1O14645 258 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 RIOK3O14730 519 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 TTI1O43156 1089 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 PLRG1O43660 514 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 FZD6O60353 706 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 SUN1O94901 812 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 PCDH8O95206 1070 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 SEMA4FO95754 770 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TRBC1P01850 177 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3HP0C7X1 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 ZNF30P17039 623 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 VIPR1P32241 457 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 DRD3P35462 400 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 MAGEA6P43360 314 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 NPY2RP49146 381 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 FNTBP49356 437 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 DRG2P55039 364 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 RPS21P63220 83 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 FAM193AP78312 1265 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 PDE1BQ01064 536 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 FOXK2Q01167 660 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 CAV1Q03135 178 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 CDH17Q12864 832 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TRIP13Q15645 432 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 SLC1A5Q15758 541 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 POM121L1PQ3SYA9 428 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TMEM52BQ4KMG9 183 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 SPDYCQ5MJ68 293 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 ARMC3Q5W041 872 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 KCTD11Q693B1 232 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3GQ6DHY5 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3CQ6IPX1 549 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 KIAA1161Q6NSJ0 714 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 ZC3H14Q6PJT7 736 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 RANBP10Q6VN20 620 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms