RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CCNYQ8ND76 341 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 OR6K2Q8NGY2 324 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 FAM71BQ8TC56 605 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 SCG3Q8WXD2 468 aaKnown RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 RBM41Q96IZ5 413 aaKnown RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 NUDCD1Q96RS6 583 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 SRPK1Q96SB4 655 aaKnown RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 DUSP23Q9BVJ7 150 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 NOL6Q9H6R4 1146 aaKnown RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 PDFQ9HBH1 243 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 RXFP3Q9NSD7 469 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 KLHL11Q9NVR0 708 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 NENFQ9UMX5 172 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 ATP8A1Q9Y2Q0 1164 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 TSPAN11A1L157 253 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 POM121CA8CG34 1229 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 TNFSF14O43557 240 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 ZNF821O75541 412 aaPredicted RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 C1SP09871 688 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 IL1R2P27930 398 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 OAS2P29728 719 aaKnown RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 GARSP41250 739 aaKnown RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 RXRGP48443 463 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 DUSP3P51452 185 aaPredicted RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 EPHB1P54762 984 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 PPP2CBP62714 309 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 PPP2CAP67775 309 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 KIF5AQ12840 1032 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 ARHGEF7Q14155 803 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 DPYSL3Q14195 570 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 CYTH1Q15438 398 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 UGP2Q16851 508 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 ZNF284Q2VY69 593 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 CCDC181Q5TID7 509 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 GLRX5Q86SX6 157 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 PIP4P1Q86T03 277 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 PARGQ86W56 976 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 ZNF592Q92610 1267 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 BTBD6Q96KE9 485 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 CHP1Q99653 195 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 BAG1Q99933 345 aaPredicted RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 C1QTNF2Q9BXJ5 285 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 USP29Q9HBJ7 922 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 LHX3Q9UBR4 397 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 PCDHA13Q9Y5I0 950 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 EPN1Q9Y6I3 576 aaPredicted RBP8.74□□□□□ -1.01
USP3-208ENST00000558285 CEP250Q9BV73 2442 aa8.74□□□□□ -1.01
USP3-208ENST00000558285 DOCK4Q8N1I0 1966 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 A0A087WUV0 522 aaPredicted RBP8.73□□□□□ -1.01
USP3-208ENST00000558285 J3KR12 359 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 MATN3O15232 486 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 STK10O94804 968 aaKnown RBP8.73□□□□□ -1.01
USP3-208ENST00000558285 NDUFA10O95299 355 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 LCA5LO95447 670 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 ELFN1P0C7U0 828 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 CD59P13987 128 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 KDELR1P24390 212 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 RPIAP49247 311 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 PEX5P50542 639 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 RPL26P61254 145 aaKnown RBP8.73□□□□□ -1.01
USP3-208ENST00000558285 GALNT2Q10471 571 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 ILKQ13418 452 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 LRRC14Q15048 493 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 TMEM52BQ4KMG9 183 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 ARMC12Q5T9G4 340 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 C11orf63Q6NUN7 778 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 CCDC50Q8IVM0 306 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 ARHGAP12Q8IWW6 846 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 CCDC13Q8IYE1 715 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 RCOR2Q8IZ40 523 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 GALNT15Q8N3T1 639 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 SDR16C5Q8N3Y7 309 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 TC2NQ8N9U0 490 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 TMEM145Q8NBT3 493 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 HAUS1Q96CS2 278 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 EXOC2Q96KP1 924 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 TSGA13Q96PP4 275 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 PPP1R2P1Q96PQ5 205 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 ADGRE3Q9BY15 652 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 TSGA10Q9BZW7 698 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 PHTF1Q9UMS5 762 aa8.73□□□□□ -1.01
USP3-208ENST00000558285 RPL26L1Q9UNX3 145 aaKnown RBP8.73□□□□□ -1.01
USP3-208ENST00000558285 FNDC3AQ9Y2H6 1198 aaKnown RBP8.73□□□□□ -1.01
USP3-208ENST00000558285 ZNF292O60281 2723 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 A0A1W2PR77 199 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 GOLGA6L9A6NEM1 432 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 IGLON5A6NGN9 336 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 H0Y8X5 98 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PSMD11O00231 422 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 CACNB4O00305 520 aaPredicted RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 PLK4O00444 970 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 AREL1O15033 823 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 INSIG1O15503 277 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 ZW10O43264 779 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 SH3BP5O60239 455 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 MAFKO60675 156 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 GJB3O75712 270 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 LDOC1O95751 146 aaPredicted RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 CD160O95971 181 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PAK4O96013 591 aaPredicted RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms