RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RARS2Q5T160 578 aaKnown RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 MAP3K21Q5TCX8 1036 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 KDELC1Q6UW63 502 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 PIWIL4Q7Z3Z4 852 aaKnown RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 AMIGO2Q86SJ2 522 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 TICAM1Q8IUC6 712 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 TTC9BQ8N6N2 239 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 TMEM102Q8N9M5 508 aaPredicted RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 PSMG2Q969U7 264 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 DNAJC1Q96KC8 554 aaKnown RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 TSPAN18Q96SJ8 248 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 SENP6Q9GZR1 1112 aaPredicted RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 ENTPD7Q9NQZ7 604 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 CACNA2D2Q9NY47 1150 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 TRPV2Q9Y5S1 764 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 C7orf72A4D263 438 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 TNFRSF10BO14763 440 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 TADA2AO75478 443 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 SUPT7LO94864 414 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 HMBSP08397 361 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 PABPC4LP0CB38 370 aaKnown RBP12.96□□□□□ -0.34
LDLR-207ENST00000558013 RPL10P27635 214 aaKnown RBP12.96□□□□□ -0.34
LDLR-207ENST00000558013 USP46P62068 366 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 SATB1Q01826 763 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 FASTKQ14296 549 aaKnown RBP12.96□□□□□ -0.34
LDLR-207ENST00000558013 FAM83EQ2M2I3 478 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 NAT14Q8WUY8 206 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 RSPH1Q8WYR4 309 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 IRGQQ8WZA9 623 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 MYEOVQ96EZ4 313 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 BTBD9Q96Q07 612 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 HAPLN3Q96S86 360 aa12.96□□□□□ -0.34
LDLR-207ENST00000558013 MRPL1Q9BYD6 325 aaKnown RBP12.96□□□□□ -0.34
LDLR-207ENST00000558013 A0A1B0GTL3 188 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 UNCXA6NJT0 531 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 UBDO15205 165 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 MMP2P08253 660 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 CHRM1P11229 460 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 THPOP40225 353 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 PRKAA2P54646 552 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 POU4F1Q01851 419 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 C11orf91Q3C1V1 193 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SLC39A12Q504Y0 691 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 HECTD2Q5U5R9 776 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 KIAA0930Q6ICG6 404 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 RTL3Q8N8U3 475 aaKnown RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 PTERQ96BW5 349 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 RPL10LQ96L21 214 aaKnown RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 B3GALT6Q96L58 329 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 CATSPERBQ9H7T0 1116 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SLCO1B7G3V0H7 640 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 PSMD12O00232 456 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 NPHS1O60500 1241 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 CELF2O95319 508 aaKnown RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 FOXA1P55317 472 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 XIAPP98170 497 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 LRP8Q14114 963 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 PSMD5Q16401 504 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 REP15Q6BDI9 236 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 TAF2Q6P1X5 1199 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 RBM44Q6ZP01 1051 aaKnown RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 MIB1Q86YT6 1006 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 PGBD5Q8N414 524 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 MARVELD2Q8N4S9 558 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 LPGAT1Q92604 370 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SLCO4A1Q96BD0 722 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 TBATAQ96M53 351 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 NSUN5Q96P11 429 aaKnown RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 SMIM14Q96QK8 99 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 KCNA7Q96RP8 456 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SLC29A1Q99808 456 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 ABCC13Q9NSE7 274 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 DSEQ9UL01 958 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 DENRO43583 198 aaKnown RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 FAM163BP0C2L3 166 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 PIM1P11309 404 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 MLLT6P55198 1093 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 PFKPQ01813 784 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SLC5A9Q2M3M2 681 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 NADK2Q4G0N4 442 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 METTL23Q86XA0 190 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 ZNF280BQ86YH2 543 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 CILP2Q8IUL8 1156 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SPATA2LQ8IUW3 424 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 ZFAND2BQ8WV99 257 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 ADAM2Q99965 735 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 SMOC2Q9H3U7 446 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 GSTO2Q9H4Y5 243 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 COQ10BQ9H8M1 238 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.95□□□□□ -0.34
LDLR-207ENST00000558013 VWA7Q9Y334 891 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 ARL5AQ9Y689 179 aa12.95□□□□□ -0.34
LDLR-207ENST00000558013 GLTPD2A6NH11 291 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 TRPC5OSA6NMA1 111 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 VILLO15195 856 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 PSMD3O43242 534 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 CLPTM1O96005 669 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 LTA4HP09960 611 aaKnown RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 ALDOCP09972 364 aaKnown RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 CHRM3P20309 590 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms