RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 KCNK16Q96T55 309 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 MMTAG2Q9BU76 263 aaKnown RBP4.9□□□□□ -1.63
SCFD1-223ENST00000557076 CIPCQ9C0C6 399 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 OSBPL2Q9H1P3 480 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 RSPH9Q9H1X1 276 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-223ENST00000557076 NEUROG2Q9H2A3 272 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 PABPC3Q9H361 631 aaKnown RBP4.9□□□□□ -1.63
SCFD1-223ENST00000557076 ST6GALNAC4Q9H4F1 302 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 FBXO44Q9H4M3 255 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 TLR8Q9NR97 1041 aaKnown RBP4.9□□□□□ -1.63
SCFD1-223ENST00000557076 KLHL11Q9NVR0 708 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 FBXL12Q9NXK8 326 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 ACTR10Q9NZ32 417 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 ASH2LQ9UBL3 628 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 TUBD1Q9UJT1 453 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 PCNX1Q96RV3 2341 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 F8P00451 2351 aa4.9□□□□□ -1.63
SCFD1-223ENST00000557076 PRRC2CQ9Y520 2896 aaKnown RBP4.9□□□□□ -1.63
SCFD1-223ENST00000557076 A0A1B0GVM2 712 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 NEMP2A6NFY4 417 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 FAM47DPA6NHR8 397 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 SCAMP1O15126 338 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 EPB41L2O43491 1005 aaKnown RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 TCEA3O75764 348 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 TNFSF15O95150 251 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 LDHAP00338 332 aaKnown RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 KLKB1P03952 638 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ATP5BP06576 529 aaKnown RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 KRT19P08727 400 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 DLDP09622 509 aaKnown RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 PLA2G4BP0C869 781 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 IRF1P10914 325 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 LCP1P13796 627 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 PGFP49763 221 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 COG7P83436 770 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ARID5AQ03989 594 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 IFRD2Q12894 506 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 TRIM29Q14134 588 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 CLCA4Q14CN2 919 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 SKIDA1Q1XH10 827 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 MDH1BQ5I0G3 518 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 C3orf38Q5JPI3 329 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 SPDYAQ5MJ70 313 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ZNF776Q68DI1 518 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ZNF720Q7Z2F6 126 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 KIAA0907Q7Z7F0 614 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 C14orf80Q86SX3 495 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 PTRH1Q86Y79 214 aaKnown RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 DTX3Q8N9I9 347 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 TMEM145Q8NBT3 493 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 Q8TCH9 128 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 GANCQ8TET4 914 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 POMGNT1Q8WZA1 660 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 APOLD1Q96LR9 279 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 WWC2-AS2Q96NR7 200 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 FIZ1Q96SL8 496 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 B3GNT5Q9BYG0 378 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 DCLK3Q9C098 648 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ZNF518BQ9C0D4 1074 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 FOXP1Q9H334 677 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 SNX25Q9H3E2 840 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 PARVGQ9HBI0 331 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 SLC6A20Q9NP91 592 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 PDRG1Q9NUG6 133 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 NCKIPSDQ9NZQ3 722 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 SEPT10Q9P0V9 454 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ARHGAP20Q9P2F6 1191 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 FZD4Q9ULV1 537 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 CLEC4EQ9ULY5 219 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 R3HCC1Q9Y3T6 440 aaKnown RBP4.89□□□□□ -1.63
SCFD1-223ENST00000557076 ENTPD2Q9Y5L3 495 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 NPFFR2Q9Y5X5 522 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 CSMD1Q96PZ7 3565 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 MED13Q9UHV7 2174 aa4.89□□□□□ -1.63
SCFD1-223ENST00000557076 NIPBLQ6KC79 2804 aaeCLIP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 CELSR1Q9NYQ6 3014 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3DA0A087WVF3 549 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3IA0A087WXS9 549 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3EA0A087X179 549 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3KA0A087X1G2 549 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 LY6G6EA0A0G2JKS1 128 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 EME2A4GXA9 379 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 VPS37CA5D8V6 355 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3FA6NER0 549 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3LB9A6J9 549 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TMX2-CTNND1H3BSU7 103 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 K7ENM7 598 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 CLDN5O00501 218 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 SMAD7O15105 426 aaKnown RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 NVLO15381 856 aaKnown RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 RNASEH1O60930 286 aaKnown RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 STC2O76061 302 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 KLHL18O94889 574 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 CNOT4O95628 575 aaKnown RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TBC1D3HP0C7X1 549 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 GIMD1P0DJR0 217 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 ALPPL2P10696 532 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 GOT1P17174 413 aa4.88□□□□□ -1.63
SCFD1-223ENST00000557076 ATF4P18848 351 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-223ENST00000557076 TGM2P21980 687 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms