RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.64■□□□□ 0.89
VTI1B-205ENST00000555543 RCCD1A6NED2 376 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 ZNF487B1APH4 448 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 HTRA2O43464 458 aaPredicted RBP20.64■□□□□ 0.89
VTI1B-205ENST00000555543 SLC1A1P43005 524 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 NOP2P46087 812 aaKnown RBP20.64■□□□□ 0.89
VTI1B-205ENST00000555543 RABIFP47224 123 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 LIG3P49916 1009 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 TRAF2Q12933 501 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 IRF4Q15306 451 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 IFI16Q16666 785 aaKnown RBP20.64■□□□□ 0.89
VTI1B-205ENST00000555543 ZNF542PQ5EBM4 170 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 RAD9BQ6WBX8 426 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 RAB44Q7Z6P3 723 aaPredicted RBP20.64■□□□□ 0.89
VTI1B-205ENST00000555543 BBS5Q8N3I7 341 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 CHCHD4Q8N4Q1 142 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 EID2Q8N6I1 236 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 TSGA13Q96PP4 275 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 UCKL1Q9NWZ5 548 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 FTSJ1Q9UET6 329 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 SALL4Q9UJQ4 1053 aa20.64■□□□□ 0.89
VTI1B-205ENST00000555543 SPTY2D1-AS1A0A0U1RR47 76 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 GOLGA8CPA6NN73 597 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 MATN3O15232 486 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 TNFSF14O43557 240 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 SPOPO43791 374 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 SOCS5O75159 536 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 NDUFA10O95299 355 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 CCNCP24863 283 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 PDE1CQ14123 709 aaPredicted RBP20.63■□□□□ 0.89
VTI1B-205ENST00000555543 IHHQ14623 411 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 SPA17Q15506 151 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 SLC9A4Q6AI14 798 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 VSIG1Q86XK7 387 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 RHOT1Q8IXI2 618 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 PAF1Q8N7H5 531 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 SPOCK2Q92563 424 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 RNF25Q96BH1 459 aaPredicted RBP20.63■□□□□ 0.89
VTI1B-205ENST00000555543 KLK13Q9UKR3 277 aa20.63■□□□□ 0.89
VTI1B-205ENST00000555543 APOBEC2Q9Y235 224 aaKnown RBP20.63■□□□□ 0.89
VTI1B-205ENST00000555543 REXO2Q9Y3B8 237 aaKnown RBP20.63■□□□□ 0.89
VTI1B-205ENST00000555543 EPN1Q9Y6I3 576 aaPredicted RBP20.63■□□□□ 0.89
VTI1B-205ENST00000555543 ARID1BQ8NFD5 2236 aaPredicted RBP20.62■□□□□ 0.89
VTI1B-205ENST00000555543 EPG5Q9HCE0 2579 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 DKK1O94907 266 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 TRIM16O95361 564 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 GM2AP17900 193 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 DGKAP23743 735 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 WSCD2Q2TBF2 565 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 TIGD7Q6NT04 549 aaPredicted RBP20.62■□□□□ 0.89
VTI1B-205ENST00000555543 MFSD7Q6UXD7 560 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 NPNTQ6UXI9 565 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 DPPA4Q7L190 304 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 DCP2Q8IU60 420 aaKnown RBP20.62■□□□□ 0.89
VTI1B-205ENST00000555543 TMTC1Q8IUR5 882 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 SLC25A45Q8N413 288 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 PDCD6IPQ8WUM4 868 aaKnown RBP20.62■□□□□ 0.89
VTI1B-205ENST00000555543 ADAMTS14Q8WXS8 1223 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 FATE1Q969F0 183 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 HDAC11Q96DB2 347 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 LGMNQ99538 433 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 SEMA3CQ99985 751 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 C1QTNF7Q9BXJ2 289 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 DNAJC28Q9NX36 388 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 B4GALT6Q9UBX8 382 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 KLF15Q9UIH9 416 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 PNMA8BQ9ULN7 279 aaPredicted RBP20.62■□□□□ 0.89
VTI1B-205ENST00000555543 ALG6Q9Y672 507 aa20.62■□□□□ 0.89
VTI1B-205ENST00000555543 A0A0A6YYK5 440 aaPredicted RBP20.61■□□□□ 0.89
VTI1B-205ENST00000555543 A8MX80 341 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 APOL1O14791 398 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 PIAS2O75928 621 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 CPP00450 1065 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 HLA-DQB2P05538 268 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 MX2P20592 715 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 MARCKSL1P49006 195 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 DSC2Q02487 901 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 LRRC14Q15048 493 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 RALGPS1Q5JS13 557 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 FAM182AQ5T1J6 154 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 ALG1LQ6GMV1 187 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 LIPIQ6XZB0 460 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 PARGQ86W56 976 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 TMEM139Q8IV31 216 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.61■□□□□ 0.89
VTI1B-205ENST00000555543 CCNYQ8ND76 341 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 IFT43Q96FT9 208 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 CNDP2Q96KP4 475 aaKnown RBP20.61■□□□□ 0.89
VTI1B-205ENST00000555543 POLR1EQ9GZS1 481 aaKnown RBP20.61■□□□□ 0.89
VTI1B-205ENST00000555543 DDX56Q9NY93 547 aaKnown RBP20.61■□□□□ 0.89
VTI1B-205ENST00000555543 HEY1Q9Y5J3 304 aa20.61■□□□□ 0.89
VTI1B-205ENST00000555543 MAP1BP46821 2468 aaKnown RBP20.61■□□□□ 0.89
VTI1B-205ENST00000555543 TRIM38O00635 465 aa20.6■□□□□ 0.89
VTI1B-205ENST00000555543 PSTPIP1O43586 416 aa20.6■□□□□ 0.89
VTI1B-205ENST00000555543 LDOC1O95751 146 aaPredicted RBP20.6■□□□□ 0.89
VTI1B-205ENST00000555543 ELFN1P0C7U0 828 aa20.6■□□□□ 0.89
VTI1B-205ENST00000555543 CCNB1P14635 433 aa20.6■□□□□ 0.89
VTI1B-205ENST00000555543 NME1P15531 152 aaKnown RBP20.6■□□□□ 0.89
VTI1B-205ENST00000555543 POLR2LP62875 67 aaKnown RBP20.6■□□□□ 0.89
VTI1B-205ENST00000555543 ITKQ08881 620 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms