RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 F5H423 210 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 NEMP1O14524 444 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 RIOK3O14730 519 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 TSPAN6O43657 245 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 PRLP01236 227 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 CCDC175P0C221 793 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 CTPS1P17812 591 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 PTPN3P26045 913 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 CD38P28907 300 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 CD68P34810 354 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 PTPN7P35236 360 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 HSPA9P38646 679 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 MMP12P39900 470 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 CTSKP43235 329 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 LIMK1P53667 647 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 RPS21P63220 83 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 ARHGAP8P85298 464 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 WASHC5Q12768 1159 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 HLA-BQ31612 363 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 TMEM52BQ4KMG9 183 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 SETMARQ53H47 684 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 KIAA1161Q6NSJ0 714 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 NEK5Q6P3R8 708 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 NYAP1Q6ZVC0 841 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 RABEPKQ7Z6M1 372 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 RNF10Q8N5U6 811 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 PDCD7Q8N8D1 485 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 RAB7BQ96AH8 199 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 FEM1CQ96JP0 617 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 BMFQ96LC9 184 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 AGAP3Q96P47 875 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 C1QTNF2Q9BXJ5 285 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 SLC17A9Q9BYT1 436 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 TSGA10Q9BZW7 698 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 POLR1EQ9GZS1 481 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 GAREM1Q9H706 876 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 MBNL1Q9NR56 388 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 B4GALT6Q9UBX8 382 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 CDV3Q9UKY7 258 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 R3HDM2Q9Y2K5 976 aaKnown RBP12.44□□□□□ -0.42
SYNE2-214ENST00000554928 PCDHB9Q9Y5E1 797 aa12.44□□□□□ -0.42
SYNE2-214ENST00000554928 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 POM121BA6NF01 834 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 PRAMEF26H0Y7S4 382 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 PPP1R12AO14974 1030 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 VILLO15195 856 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 KRT86O43790 486 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 FZD6O60353 706 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 PGLSO95336 258 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 CPP00450 1065 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 ALPIP09923 528 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 C6P13671 934 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 HNRNPA2B1P22626 353 aaKnown RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 LHCGRP22888 699 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 XPAP23025 273 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 CD86P42081 329 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 ID4P47928 161 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 LIG3P49916 1009 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 COPS2P61201 443 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 FAM193AP78312 1265 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 SKOR1P84550 965 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 IL9RQ01113 521 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 OTUD4Q01804 1114 aaKnown RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 CCDC15Q0P6D6 951 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 GRM3Q14832 879 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 NOMO1Q15155 1222 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 SHBQ15464 509 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 CFAP58Q5T655 872 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 BRAT1Q6PJG6 821 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 ZNF662Q6ZS27 426 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 ADAT2Q7Z6V5 191 aaKnown RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 TSPAN33Q86UF1 283 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 SYCE1Q8N0S2 351 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 SLC22A18ASQ8N1D0 253 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 PELI3Q8N2H9 469 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 BBS5Q8N3I7 341 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 TXLNBQ8N3L3 684 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 OR13H1Q8NG92 308 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 SPATA22Q8NHS9 363 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 ACTL9Q8TC94 416 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 HCAR2Q8TDS4 363 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 TFB1MQ8WVM0 346 aaKnown RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 PIH1D2Q8WWB5 315 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 P3H4Q92791 437 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 FUBP1Q96AE4 644 aaKnown RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 QKIQ96PU8 341 aaKnown RBP eCLIP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 DMTF1Q9Y222 760 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 CHKBQ9Y259 395 aa12.43□□□□□ -0.42
SYNE2-214ENST00000554928 TP53BP1Q12888 1972 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-214ENST00000554928 CACNA1EQ15878 2313 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 KNL1Q8NG31 2342 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 NPIPB15A6NHN6 443 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-214ENST00000554928 MIF4GDA9UHW6 222 aaKnown RBP12.42□□□□□ -0.42
SYNE2-214ENST00000554928 APOC4-APOC2K7ER74 178 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 TLR4O00206 839 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 GIPC1O14908 333 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 FOXD2O60548 495 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-214ENST00000554928 SOCS5O75159 536 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 APOC2P02655 101 aa12.42□□□□□ -0.42
SYNE2-214ENST00000554928 SYPP08247 313 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms