RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NUDCD1Q96RS6 583 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 NLGN3Q9NZ94 848 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 CACNA1BQ00975 2339 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 NEMP2A6NFY4 417 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 H3BM21 787 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 MMP20O60882 483 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 RFPL3O75679 317 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 CAPNS1P04632 268 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 CD48P09326 243 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 GIMD1P0DJR0 217 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 C6P13671 934 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 CKMT2P17540 419 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 GARSP41250 739 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 HADHBP55084 474 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 ADKP55263 362 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 TAS2R40P59535 323 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 LRRC73Q5JTD7 316 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 LRRC38Q5VT99 294 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 MACC1Q6ZN28 852 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 TMPRSS12Q86WS5 348 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 CACTIN-AS1Q8N1I8 211 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 PCDH19Q8TAB3 1148 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 SLC35G2Q8TBE7 412 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 NSMCE1Q8WV22 266 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 MAML1Q92585 1016 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 DUSP23Q9BVJ7 150 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 USP29Q9HBJ7 922 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 DKK4Q9UBT3 224 aa16.16■□□□□ 0.18
CCDC88C-209ENST00000554872 DMXL2Q8TDJ6 3036 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 TMEM110-MUSTN1A8MSY1 372 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 SCAMP1O15126 338 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 MFSD11O43934 449 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 LCA5LO95447 670 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 ALPPL2P10696 532 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 MMP13P45452 471 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 SCNN1BP51168 640 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 RALGDSQ12967 914 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 MMRN1Q13201 1228 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 PDE1CQ14123 709 aaPredicted RBP16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 LRRC14Q15048 493 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 ANKRD20A8PQ5CZ79 823 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 MARC1Q5VT66 337 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 TIGD7Q6NT04 549 aaPredicted RBP16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 DPPA4Q7L190 304 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 PGBD5Q8N414 524 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 KCTD6Q8NC69 237 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 ZNF548Q8NEK5 533 aaPredicted RBP16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 BTN2A2Q8WVV5 523 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 NSMCE3Q96MG7 304 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 WRAP53Q9BUR4 548 aaKnown RBP16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 ANKRD36A6QL64 1941 aa16.15■□□□□ 0.18
CCDC88C-209ENST00000554872 PLXNB3Q9ULL4 1909 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 TRIM38O00635 465 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 TPP1O14773 563 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 SDC3O75056 442 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 ITIH2P19823 946 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 MX2P20592 715 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 CES1P23141 567 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 NFKBIAP25963 317 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 SLC1A1P43005 524 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 SSR1P43307 286 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 LIG3P49916 1009 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 EIF2B5Q13144 721 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 MTM1Q13496 603 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 IRF4Q15306 451 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 IFI16Q16666 785 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 WSCD2Q2TBF2 565 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 ATP13A4Q4VNC1 1196 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 TPRG1LQ5T0D9 272 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 CPNE8Q86YQ8 564 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 TC2NQ8N9U0 490 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 HDAC11Q96DB2 347 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 MBNL1Q9NR56 388 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 SPTLC3Q9NUV7 552 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 HAUS2Q9NVX0 235 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 UCKL1Q9NWZ5 548 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 DNAJC28Q9NX36 388 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 KCTD5Q9NXV2 234 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 NCKIPSDQ9NZQ3 722 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 PPIL1Q9Y3C6 166 aa16.14■□□□□ 0.17
CCDC88C-209ENST00000554872 LRRK1Q38SD2 2015 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 MATN3O15232 486 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 SIGLEC6O43699 453 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 HOXC4P09017 264 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 CKMT1AP12532 417 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 FECHP22830 423 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 KDELR1P24390 212 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 CCNCP24863 283 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 THOP1P52888 689 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 CAMK2BQ13554 666 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 HS1BP3Q53T59 392 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 LIPIQ6XZB0 460 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 CCDC170Q8IYT3 715 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 SDR16C5Q8N3Y7 309 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 PQLC3Q8N755 202 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 MRFAP1L1Q96HT8 127 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 MCCC1Q96RQ3 725 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 TRIM5Q9C035 493 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 POLR1EQ9GZS1 481 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 NOD2Q9HC29 1040 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms