RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SLC26A9Q7LBE3 791 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 IRF2BP1Q8IU81 584 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 C1orf131Q8NDD1 294 aaKnown RBP13.03□□□□□ -0.32
VPS29-211ENST00000553128 GPBAR1Q8TDU6 330 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 NT5C3BQ969T7 300 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 SLC45A3Q96JT2 553 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 WDR92Q96MX6 357 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 CATSPER2Q96P56 530 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 INTS2Q9H0H0 1204 aaKnown RBP13.03□□□□□ -0.32
VPS29-211ENST00000553128 DPEP2Q9H4A9 486 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 UBE2TQ9NPD8 197 aaPredicted RBP13.03□□□□□ -0.32
VPS29-211ENST00000553128 OCIAD1Q9NX40 245 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 TP53TG5Q9Y2B4 290 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 DGKBQ9Y6T7 804 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 CHD5Q8TDI0 1954 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 DOCK4Q8N1I0 1966 aa13.02□□□□□ -0.32
VPS29-211ENST00000553128 LOC101059948A0A1B0GTJ6 334 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 A1L4Q6 167 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 HGSO14964 777 aaPredicted RBP13.02□□□□□ -0.33
VPS29-211ENST00000553128 INSIG1O15503 277 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 AGFG2O95081 481 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 ZNF202O95125 648 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 POP4O95707 220 aaKnown RBP13.02□□□□□ -0.33
VPS29-211ENST00000553128 GNLYP22749 145 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 COL8A1P27658 744 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 HTR1BP28222 390 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 CD1CP29017 333 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 APBA1Q02410 837 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 DEUP1Q05D60 604 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 KLRB1Q12918 225 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 CCDC40Q4G0X9 1142 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 TMEM52BQ4KMG9 183 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 COBLL1Q53SF7 1204 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 NKAIN2Q5VXU1 208 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 ZNF787Q6DD87 383 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 ATCAYQ86WG3 371 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 OSBPL1AQ9BXW6 950 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 ZYG11BQ9C0D3 744 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 SPATS2LQ9NUQ6 558 aaKnown RBP13.02□□□□□ -0.33
VPS29-211ENST00000553128 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS29-211ENST00000553128 AKAP7Q9P0M2 348 aaPredicted RBP13.02□□□□□ -0.33
VPS29-211ENST00000553128 TMEM9Q9P0T7 183 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 SRPK3Q9UPE1 567 aa13.02□□□□□ -0.33
VPS29-211ENST00000553128 CACNA1DQ01668 2161 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 P4HA2O15460 535 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 SEMA7AO75326 666 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 PRKCGP05129 697 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 SNRPD1P62314 119 aaKnown RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 LRRC63Q05C16 580 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 POLD3Q15054 466 aaPredicted RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 RAB6CQ53S08 254 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 ZNF658Q5TYW1 1059 aaPredicted RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 CAPRIN2Q6IMN6 1127 aaKnown RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 TRNP1Q6NT89 227 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 TIPARPQ7Z3E1 657 aaKnown RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 ZNF397Q8NF99 534 aaPredicted RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 APOBEC4Q8WW27 367 aaKnown RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 PGAP3Q96FM1 320 aaPredicted RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 SPATA32Q96LK8 384 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 MAGEB5Q9BZ81 275 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 SCAND2PQ9GZW5 306 aaPredicted RBP13.01□□□□□ -0.33
VPS29-211ENST00000553128 RAB6CQ9H0N0 254 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 PLCB1Q9NQ66 1216 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 SLC39A1Q9NY26 324 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 PILRAQ9UKJ1 303 aa13.01□□□□□ -0.33
VPS29-211ENST00000553128 FBN2P35556 2912 aa13□□□□□ -0.33
VPS29-211ENST00000553128 ANKRD36A6QL64 1941 aa13□□□□□ -0.33
VPS29-211ENST00000553128 PIGNO95427 931 aa13□□□□□ -0.33
VPS29-211ENST00000553128 CD44P16070 742 aaKnown RBP13□□□□□ -0.33
VPS29-211ENST00000553128 CSF2RBP32927 897 aa13□□□□□ -0.33
VPS29-211ENST00000553128 USP8P40818 1118 aa13□□□□□ -0.33
VPS29-211ENST00000553128 LIMK2P53671 638 aa13□□□□□ -0.33
VPS29-211ENST00000553128 CETN1Q12798 172 aa13□□□□□ -0.33
VPS29-211ENST00000553128 ANKS6Q68DC2 871 aa13□□□□□ -0.33
VPS29-211ENST00000553128 ZNF438Q7Z4V0 828 aa13□□□□□ -0.33
VPS29-211ENST00000553128 C17orf82Q86X59 251 aaPredicted RBP13□□□□□ -0.33
VPS29-211ENST00000553128 FAM131BQ86XD5 332 aa13□□□□□ -0.33
VPS29-211ENST00000553128 NRROSQ86YC3 692 aa13□□□□□ -0.33
VPS29-211ENST00000553128 PELI3Q8N2H9 469 aa13□□□□□ -0.33
VPS29-211ENST00000553128 OR56A4Q8NGH8 313 aa13□□□□□ -0.33
VPS29-211ENST00000553128 SPATA20Q8TB22 786 aa13□□□□□ -0.33
VPS29-211ENST00000553128 PATE1Q8WXA2 126 aa13□□□□□ -0.33
VPS29-211ENST00000553128 DDA1Q9BW61 102 aa13□□□□□ -0.33
VPS29-211ENST00000553128 LGR4Q9BXB1 951 aa13□□□□□ -0.33
VPS29-211ENST00000553128 SPRY4Q9C004 299 aa13□□□□□ -0.33
VPS29-211ENST00000553128 GPN2Q9H9Y4 310 aaPredicted RBP13□□□□□ -0.33
VPS29-211ENST00000553128 PCDH12Q9NPG4 1184 aa13□□□□□ -0.33
VPS29-211ENST00000553128 DNAI1Q9UI46 699 aa13□□□□□ -0.33
VPS29-211ENST00000553128 PCDHGC3Q9UN70 934 aa13□□□□□ -0.33
VPS29-211ENST00000553128 MRPS18BQ9Y676 258 aaKnown RBP13□□□□□ -0.33
VPS29-211ENST00000553128 EFCAB7A8K855 629 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 TMCC1O94876 653 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 FGF1P05230 155 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 FLT3P36888 993 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 LIG3P49916 1009 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 NR1D2Q14995 579 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 FHL5Q5TD97 284 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 C16orf46Q6P387 395 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 NLRP14Q86W24 1093 aa12.99□□□□□ -0.33
VPS29-211ENST00000553128 ZSWIM9Q86XI8 627 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms