RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SLC38A8A6NNN8 435 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SRP72O76094 671 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ALDH1A2O94788 518 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SEC24AO95486 1093 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SELPP16109 830 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 PIK3R1P27986 724 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 HOXD10P28358 340 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MZF1P28698 734 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ATP5C1P36542 298 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SCNN1AP37088 669 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 RPL34P49207 117 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 RPL14P50914 215 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SLC18A1P54219 525 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CDK18Q07002 472 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SLC20A2Q08357 652 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 LBRQ14739 615 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ZRSR2Q15696 482 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 TSNAXIP1Q2TAA8 658 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NADSYN1Q6IA69 706 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 TMEM154Q6P9G4 183 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 LIMS2Q7Z4I7 341 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CCNJLQ8IV13 435 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ARHGAP24Q8N264 748 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF366Q8N895 744 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 PTGR2Q8N8N7 351 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MAB21L3Q8N8X9 362 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 DIS3LQ8TF46 1054 aaKnown RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 DDI1Q8WTU0 396 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SEPT8Q92599 483 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ATP6V1E2Q96A05 226 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CDK15Q96Q40 435 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 FCRL5Q96RD9 977 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 APOL5Q9BWW9 433 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 PCDHAC1Q9H158 963 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 OSBPL2Q9H1P3 480 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SMOC2Q9H3U7 446 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 HIPK3Q9H422 1215 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 FBXO44Q9H4M3 255 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ZDHHC4Q9NPG8 344 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ENTPD7Q9NQZ7 604 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 GALPQ9UBC7 116 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 STOML1Q9UBI4 398 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 VWA7Q9Y334 891 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SPO11Q9Y5K1 396 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 RGPD3A6NKT7 1758 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 RGPD4Q7Z3J3 1758 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 KRT87PA6NCN2 255 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MAP3K7O43318 606 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 TBL1XO60907 577 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NIPSNAP2O75323 286 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SNNO75324 88 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NDUFS3O75489 264 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 TRIM16O95361 564 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 GLP2RO95838 553 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 KLKB1P03952 638 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SERPINA6P08185 405 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 LINC00032P0C843 101 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 PSMC3P17980 439 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 UGT1A6P19224 532 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 UGT1A1P22309 533 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 UGT1A4P22310 534 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 UGT1A3P35503 534 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 UGT1A5P35504 534 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 BTKQ06187 659 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC15Q0P6D6 951 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SCAPQ12770 1279 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NOGQ13253 232 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF177Q13360 481 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 SEMA3AQ14563 771 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NUMA1Q14980 2115 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 PTPRNQ16849 979 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 C18orf21Q32NC0 220 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 BRMS1LQ5PSV4 323 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 TSTD2Q5T7W7 516 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 LRRC74BQ6ZQY2 392 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ACAD11Q709F0 780 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CAMK1DQ8IU85 385 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CLDN19Q8N6F1 224 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NAT16Q8N8M0 369 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC97Q96F63 343 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-215ENST00000552823 TMEM169Q96HH4 297 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ACOX2Q99424 681 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 ZBED2Q9BTP6 218 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 C1orf50Q9BV19 199 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC106Q9BWC9 280 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 DCLRE1BQ9H816 532 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MID1IP1Q9NPA3 183 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 NDE1Q9NXR1 346 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 RRN3Q9NYV6 651 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 FKBPLQ9UIM3 349 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MCM8Q9UJA3 840 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 CDYLQ9Y232 598 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 BRWD1Q9NSI6 2320 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC160A6NGH7 325 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ARVCFO00192 962 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 BIRC5O15392 142 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 INSIG1O15503 277 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PRAMEF12O95522 483 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms