RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ETFBP38117 255 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CHRNA4P43681 627 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 KCNC1P48547 511 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SLC7A2P52569 658 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PLOD1Q02809 727 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TRAP1Q12931 704 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 STX5Q13190 355 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CSHL1Q14406 222 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 BTBD8Q5XKL5 378 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CLEC6AQ6EIG7 209 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ZBTB49Q6ZSB9 765 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PDZD4Q76G19 769 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 KDELC2Q7Z4H8 507 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CNTN4Q8IWV2 1026 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 APPL2Q8NEU8 664 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 IPMKQ8NFU5 416 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FNDC8Q8TC99 324 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 EDEM1Q92611 657 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TFAP2CQ92754 450 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 EMID1Q96A84 441 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PHF21BQ96EK2 531 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 DUS3LQ96G46 650 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RMND5BQ96G75 393 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ELMO2Q96JJ3 720 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 C3orf30Q96M34 536 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 OSMRQ99650 979 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 HNRNPABQ99729 332 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ANKRD60Q9BZ19 345 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TRIM8Q9BZR9 551 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FAM49AQ9H0Q0 323 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 MRPL46Q9H2W6 279 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ADAMTS10Q9H324 1103 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ATXN3LQ9H3M9 355 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 MEAF6Q9HAF1 191 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CHST12Q9NRB3 414 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PNPLA3Q9NST1 481 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 MRGBPQ9NV56 204 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SMOXQ9NWM0 555 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 IPO11Q9UI26 975 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FBXW11Q9UKB1 542 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 STAP1Q9ULZ2 295 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PTGDR2Q9Y5Y4 395 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RAD54BQ9Y620 910 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SQORQ9Y6N5 450 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TTC3P53804 2025 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TRIP12Q14669 1992 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TRPC5OSA6NMA1 111 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 H3BRB1 525 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PPP6CO00743 305 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NME4O00746 187 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 MRASO14807 208 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 UBDO15205 165 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NCAM2O15394 837 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CACNG3O60359 315 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ATE1O95260 518 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 USP17L7P0C7H9 530 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 IMPDH2P12268 514 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NCAM1P13591 858 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CHRM3P20309 590 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ATP5F1P24539 256 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ADCYAP1R1P41586 468 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 GRIA3P42263 894 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NME5P56597 212 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DAOAP59103 153 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TUBA4AP68366 448 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TNK2Q07912 1038 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SCAPQ12770 1279 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 KCTD2Q14681 263 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 GRIK4Q16099 956 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DCAF4L1Q3SXM0 396 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DALRD3Q5D0E6 543 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TECRLQ5HYJ1 363 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 KRT80Q6KB66 452 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PPP4R4Q6NUP7 873 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SLC27A1Q6PCB7 646 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DHRS4L2Q6PKH6 230 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 MOB2Q70IA6 237 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ARMCX2Q7L311 632 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 BHLHA9Q7RTU4 235 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CATSPER4Q7RTX7 472 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PIWIL4Q7Z3Z4 852 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CUZD1Q86UP6 607 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CLVS1Q8IUQ0 354 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 KLHDC8BQ8IXV7 354 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 BBS5Q8N3I7 341 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CBR4Q8N4T8 237 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ARRDC4Q8NCT1 418 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ZMIZ2Q8NF64 920 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TRPC4APQ8TEL6 797 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ANKRD49Q8WVL7 239 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM40Q8WWA1 233 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NTAN1Q96AB6 310 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PPWD1Q96BP3 646 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 C12orf43Q96C57 262 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SMOQ99835 787 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DCUN1D5Q9BTE7 237 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 BRD8Q9H0E9 1235 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TUT1Q9H6E5 874 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 LRRC4Q9HBW1 653 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SPAG4Q9NPE6 437 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms