RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 BTN2A2Q8WVV5 523 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 HNRNPLLQ8WVV9 542 aaKnown RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 IL12RB2Q99665 862 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 EVA1BQ9NVM1 165 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 SPASTQ9UBP0 616 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 SEPT3Q9UH03 358 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 CSNK1G3Q9Y6M4 447 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 U3KQA8 63 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 ADAMTS20P59510 1910 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 MT-CO3P00414 261 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 DUSP3P51452 185 aaPredicted RBP16.45■□□□□ 0.22
VPS29-207ENST00000549970 SLC10A7Q0GE19 358 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 CDKN3Q16667 212 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 COL28A1Q2UY09 1125 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 ZSCAN23Q3MJ62 389 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 PRRT3Q5FWE3 981 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 CCDC122Q5T0U0 273 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 FAXCQ5TGI0 409 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 TMCO4Q5TGY1 634 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 IFI44Q8TCB0 444 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 IQCDQ96DY2 449 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 CSPG4P5Q96PW8 444 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 LRRC61Q9BV99 259 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 SLC13A1Q9BZW2 595 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 USP29Q9HBJ7 922 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 IP6K2Q9UHH9 426 aa16.45■□□□□ 0.22
VPS29-207ENST00000549970 NBEAQ8NFP9 2946 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 TTC24A2A3L6 582 aaPredicted RBP16.44■□□□□ 0.22
VPS29-207ENST00000549970 TOR1BO14657 336 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 OPA1O60313 960 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 GCATO75600 419 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 PCCBP05166 539 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 CYP1A2P05177 515 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 CASP14P31944 242 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 SSR1P43307 286 aaKnown RBP16.44■□□□□ 0.22
VPS29-207ENST00000549970 ADKP55263 362 aaKnown RBP16.44■□□□□ 0.22
VPS29-207ENST00000549970 AP1S1P61966 158 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 SLC25A11Q02978 314 aaKnown RBP16.44■□□□□ 0.22
VPS29-207ENST00000549970 PPARDQ03181 441 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 NSUN2Q08J23 767 aaKnown RBP eCLIP16.44■□□□□ 0.22
VPS29-207ENST00000549970 ZNF235Q14590 738 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 TCEA2Q15560 299 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 ALKBH5Q6P6C2 394 aaKnown RBP16.44■□□□□ 0.22
VPS29-207ENST00000549970 NIPA2Q8N8Q9 360 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 DCBLD1Q8N8Z6 715 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 ECHDC3Q96DC8 303 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 NSMCE3Q96MG7 304 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 ZNF599Q96NL3 588 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 DCBLD2Q96PD2 775 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 PSKH2Q96QS6 385 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 NRSN2Q9GZP1 204 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 PCDH18Q9HCL0 1135 aa16.44■□□□□ 0.22
VPS29-207ENST00000549970 LOC400499M0QZD8 3231 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 CPED1A4D0V7 1026 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 MYO1FO00160 1098 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 TPP1O14773 563 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 GP1BAP07359 652 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 PTMSP20962 102 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 GJC1P36383 396 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 RENBPP51606 427 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 CDH6P55285 790 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 RALGDSQ12967 914 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 KRT81Q14533 505 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 INPP5AQ14642 412 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 RTP5Q14D33 572 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 GUSBP11Q6P575 273 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 EFL1Q7Z2Z2 1120 aaKnown RBP16.43■□□□□ 0.22
VPS29-207ENST00000549970 HID1Q8IV36 788 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 CACTIN-AS1Q8N1I8 211 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 ATPAF2Q8N5M1 289 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 ZNF564Q8TBZ8 553 aaPredicted RBP16.43■□□□□ 0.22
VPS29-207ENST00000549970 MAPK15Q8TD08 544 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 TEKT4Q8WW24 435 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 APOOQ9BUR5 198 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 XPO4Q9C0E2 1151 aaKnown RBP16.43■□□□□ 0.22
VPS29-207ENST00000549970 ABCG4Q9H172 646 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 SALL4Q9UJQ4 1053 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 OR1A2Q9Y585 309 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 PCDHB1Q9Y5F3 818 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 SHROOM3Q8TF72 1996 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 ASXL3Q9C0F0 2248 aa16.43■□□□□ 0.22
VPS29-207ENST00000549970 A8MX80 341 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 LMO7DNF2Z398 122 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 TRAFD1O14545 582 aaPredicted RBP16.42■□□□□ 0.22
VPS29-207ENST00000549970 RECQL5O94762 991 aaPredicted RBP16.42■□□□□ 0.22
VPS29-207ENST00000549970 PEX11BO96011 259 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 TPM3P06753 285 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 ANXA6P08133 673 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 CELA2BP08218 269 aaPredicted RBP16.42■□□□□ 0.22
VPS29-207ENST00000549970 ELFN1P0C7U0 828 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 TSHRP16473 764 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 HTR1BP28222 390 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 SERPINB6P35237 376 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 PEX5P50542 639 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 POLR2LP62875 67 aaKnown RBP16.42■□□□□ 0.22
VPS29-207ENST00000549970 MMRN1Q13201 1228 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 NFATC4Q14934 902 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 AGERQ15109 404 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 NR0B2Q15466 257 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 CDCP2Q5VXM1 449 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms