RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 NFATC4Q14934 902 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 NCAPHQ15003 741 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 ARHGAP44Q17R89 818 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 SLC25A52Q3SY17 297 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 TMEM164Q5U3C3 297 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 ENOSF1Q7L5Y1 443 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 FMR1NBQ8N0W7 255 aaPredicted RBP12.87□□□□□ -0.35
SCAF11-208ENST00000546534 FAM26EQ8N5C1 309 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 SMARCE1Q969G3 411 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 PDXPQ96GD0 296 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 HAPLN3Q96S86 360 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 RBM15Q96T37 977 aaKnown RBP eCLIP12.87□□□□□ -0.35
SCAF11-208ENST00000546534 APOOQ9BUR5 198 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 RDH14Q9HBH5 336 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 NDFIP2Q9NV92 336 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 LRIT1Q9P2V4 623 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 KLQ9UEF7 1012 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 TUBD1Q9UJT1 453 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.87□□□□□ -0.35
SCAF11-208ENST00000546534 ZFC3H1O60293 1989 aaKnown RBP12.87□□□□□ -0.35
SCAF11-208ENST00000546534 NOTCH2Q04721 2471 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 BLACEA4D250 179 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 TNFP01375 233 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 ATP1A2P50993 1020 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 ARSDP51689 593 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 B4GALNT1Q00973 533 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 APBA1Q02410 837 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 ARHGEF7Q14155 803 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 HLTFQ14527 1009 aaKnown RBP eCLIP12.86□□□□□ -0.35
SCAF11-208ENST00000546534 TMEM52BQ4KMG9 183 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 C14orf28Q4W4Y0 310 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 EFHC2Q5JST6 749 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 KLHL10Q6JEL2 608 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 TAF8Q7Z7C8 310 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 HSCBQ8IWL3 235 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 FAM46DQ8NEK8 389 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 SHC3Q92529 594 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 PMEPA1Q969W9 287 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 WDR92Q96MX6 357 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 CRACR2AQ9BSW2 395 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 SCAND2PQ9GZW5 306 aaPredicted RBP12.86□□□□□ -0.35
SCAF11-208ENST00000546534 GDPD2Q9HCC8 539 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 PLCB1Q9NQ66 1216 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 ZNF71Q9NQZ8 489 aaPredicted RBP12.86□□□□□ -0.35
SCAF11-208ENST00000546534 PPARGC1AQ9UBK2 798 aaKnown RBP12.86□□□□□ -0.35
SCAF11-208ENST00000546534 USP9XQ93008 2570 aaPredicted RBP12.86□□□□□ -0.35
SCAF11-208ENST00000546534 UNC13CQ8NB66 2214 aa12.86□□□□□ -0.35
SCAF11-208ENST00000546534 SPTAN1Q13813 2472 aaKnown RBP12.86□□□□□ -0.35
SCAF11-208ENST00000546534 MYO9AB2RTY4 2548 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 B4DGG1 531 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 B4GAT1O43505 415 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 LIFP15018 202 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 KRT9P35527 623 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 FLT3P36888 993 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 ETFBP38117 255 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 CCR10P46092 362 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 GEMIN4P57678 1058 aaKnown RBP12.85□□□□□ -0.35
SCAF11-208ENST00000546534 MAP9Q49MG5 647 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 HIST2H2BCQ6DN03 193 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 TRIM65Q6PJ69 517 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 PIM3Q86V86 326 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 FAM131BQ86XD5 332 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 IRF2BP1Q8IU81 584 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 ZDHHC17Q8IUH5 632 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 OR1E3Q8WZA6 343 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 AKAP7Q9P0M2 348 aaPredicted RBP12.85□□□□□ -0.35
SCAF11-208ENST00000546534 DKK3Q9UBP4 350 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 DNAI1Q9UI46 699 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 PLAAQ9Y263 795 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 DGKBQ9Y6T7 804 aa12.85□□□□□ -0.35
SCAF11-208ENST00000546534 NUDT21O43809 227 aaKnown RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 CPNE6O95741 557 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 PCCBP05166 539 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 FGF3P11487 239 aaPredicted RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 SLC9A1P19634 815 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 UGT1A3P35503 534 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 PTK2Q05397 1052 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 RAD51Q06609 339 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 AMZ1Q400G9 498 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 FAM102AQ5T9C2 384 aaPredicted RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 TRNP1Q6NT89 227 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 FOXR2Q6PJQ5 311 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 THSD4Q6ZMP0 1018 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 BNIPLQ7Z465 357 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 IL22RA1Q8N6P7 574 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 NETO2Q8NC67 525 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 RCBTB1Q8NDN9 531 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 ATL2Q8NHH9 583 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 C9orf43Q8TAL5 461 aaPredicted RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 NELFBQ8WX92 580 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 KCTD12Q96CX2 325 aaKnown RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 CFAP57Q96MR6 1250 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 GDAP1L1Q96MZ0 367 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 TAAR9Q96RI9 348 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 NUDT22Q9BRQ3 303 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 TTYH3Q9C0H2 523 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 TMEM168Q9H0V1 697 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 MAGEH1Q9H213 219 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 DPEP2Q9H4A9 486 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms