RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 SATB2Q9UPW6 733 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 KNL1Q8NG31 2342 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 TPRP12270 2363 aaKnown RBP8.66□□□□□ -1.02
CLIP1-218ENST00000545889 ARFGEF1Q9Y6D6 1849 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 HCRTO43612 131 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 AVILO75366 819 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 RASGRP1O95267 797 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 PRNPP04156 253 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 FAM163BP0C2L3 166 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 RARAP10276 462 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 COX7A2P14406 83 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 LILRA4P59901 499 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 GAD2Q05329 585 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 PPIDQ08752 370 aaKnown RBP8.66□□□□□ -1.02
CLIP1-218ENST00000545889 PGS1Q32NB8 556 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 TTC39BQ5VTQ0 682 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-218ENST00000545889 CNKSR3Q6P9H4 555 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 FAM35AQ86V20 835 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 EFCAB3Q8N7B9 438 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 ANKRD52Q8NB46 1076 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 B3GALT6Q96L58 329 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 ARPC5LQ9BPX5 153 aa8.66□□□□□ -1.02
CLIP1-218ENST00000545889 HBS1LQ9Y450 684 aaKnown RBP8.66□□□□□ -1.02
CLIP1-218ENST00000545889 MAGEB16A2A368 324 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 INPP4BO15327 924 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 GPR32O75388 356 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 VAPBO95292 243 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 EOMESO95936 686 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ANXA6P08133 673 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 FSHRP23945 695 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 GATMP50440 423 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 COPZ1P61923 177 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 FOXM1Q08050 763 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ACSM2AQ08AH3 577 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 AASDHQ4L235 1098 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 USP39Q53GS9 565 aaKnown RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ACSM2BQ68CK6 577 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 CYP20A1Q6UW02 462 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 SPOCD1Q6ZMY3 1216 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 CHST9Q7L1S5 443 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 KIAA2013Q8IYS2 634 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 HTR3CQ8WXA8 447 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ATG4AQ8WYN0 398 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ZSWIM1Q9BR11 485 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 DKK3Q9UBP4 350 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 HMGXB4Q9UGU5 601 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 MAGEB3O15480 346 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 IFNA14P01570 189 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 FYNP06241 537 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 PFKMP08237 780 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 LMO2P25791 158 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 RPA3P35244 121 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 HSPA9P38646 679 aaKnown RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 NRIP1P48552 1158 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ARRB1P49407 418 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 GPR15P49685 360 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 BLKP51451 505 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ELP6Q0PNE2 266 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ATP1A4Q13733 1029 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 CRTC3Q6UUV7 619 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 LRRC74BQ6ZQY2 392 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 DET1Q7L5Y6 550 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 MCEMP1Q8IX19 187 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 USP7Q93009 1102 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ACDQ96AP0 544 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 SEMA3CQ99985 751 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 ILKAPQ9H0C8 392 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 TRIT1Q9H3H1 467 aaKnown RBP8.65□□□□□ -1.02
CLIP1-218ENST00000545889 DPEP3Q9H4B8 488 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 RXFP1Q9HBX9 757 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 N6AMT1Q9Y5N5 214 aa8.65□□□□□ -1.02
CLIP1-218ENST00000545889 TRPC5OSA6NMA1 111 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 KATNA1O75449 491 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 UGT2B4P06133 528 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 HOXA11P31270 313 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 HOXD12P35452 270 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 IFI35P80217 286 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 SUZ12Q15022 739 aaKnown RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 LIN52Q52LA3 116 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ZNF470Q6ECI4 717 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ECHDC2Q86YB7 292 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 TOP6BLQ8N6T0 577 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 TFAP2BQ92481 460 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 UBE2E3Q969T4 207 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 CCT7Q99832 543 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 B3GNT5Q9BYG0 378 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 KRT84Q9NSB2 600 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ABI3Q9P2A4 366 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 KPNA5O15131 536 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 SNX3O60493 162 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ADAMTS4O75173 837 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 CBX6O95503 412 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 C1RP00736 705 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 UMPSP11172 480 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 IDSP22304 550 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 ALAS2P22557 587 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 MAT2AP31153 395 aaKnown RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 COILP38432 576 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-218ENST00000545889 CCNG2Q16589 344 aa8.65□□□□□ -1.03
CLIP1-218ENST00000545889 FAM187BQ17R55 369 aa8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms