RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 RBM44Q6ZP01 1051 aaKnown RBP13.23□□□□□ -0.29
RTN3-213ENST00000543552 SRLQ86TD4 932 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 RBFAQ8N0V3 343 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 ZNF248Q8NDW4 579 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 UBL7Q96S82 380 aaPredicted RBP13.23□□□□□ -0.29
RTN3-213ENST00000543552 LGMNQ99538 433 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 BOCQ9BWV1 1114 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 POLR1BQ9H9Y6 1135 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 MBNL1Q9NR56 388 aaKnown RBP13.23□□□□□ -0.29
RTN3-213ENST00000543552 TMEM63CQ9P1W3 806 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 PCDHB1Q9Y5F3 818 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 BAHCC1Q9P281 2608 aa13.23□□□□□ -0.29
RTN3-213ENST00000543552 BPTFQ12830 3046 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 A0A1B0GTH6 734 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 A0A1W2PQ67 120 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 H3BRJ5 948 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 DXOO77932 396 aaKnown RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 ELFN1P0C7U0 828 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 HOXB3P14651 431 aaPredicted RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 ERCC2P18074 760 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 KELP23276 732 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 MIPP30301 263 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 PCK1P35558 622 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 HSPA9P38646 679 aaKnown RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 ARL4AP40617 200 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 LIG3P49916 1009 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 HK3P52790 923 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 UCNP55089 124 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 ADKP55263 362 aaKnown RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 ERVPABLB-1P60509 514 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 IL10RBQ08334 325 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 NSUN2Q08J23 767 aaKnown RBP eCLIP13.22□□□□□ -0.29
RTN3-213ENST00000543552 MTM1Q13496 603 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 NFATC4Q14934 902 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 AGERQ15109 404 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 BROXQ5VW32 411 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 AFMIDQ63HM1 303 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 GUSBP11Q6P575 273 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 ZNF571Q7Z3V5 609 aaPredicted RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 GKN2Q86XP6 184 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 CAMK1DQ8IU85 385 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 BBS5Q8N3I7 341 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 ARL10Q8N8L6 244 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 NETO2Q8NC67 525 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 TSEN2Q8NCE0 465 aaKnown RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 ZNF599Q96NL3 588 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 KCTD15Q96SI1 283 aaPredicted RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 SLC39A8Q9C0K1 460 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 THSD1Q9NS62 852 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 KLQ9UEF7 1012 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 SEPT3Q9UH03 358 aa13.22□□□□□ -0.29
RTN3-213ENST00000543552 BZW2Q9Y6E2 419 aaKnown RBP13.22□□□□□ -0.29
RTN3-213ENST00000543552 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.21□□□□□ -0.29
RTN3-213ENST00000543552 MUSKO15146 869 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 LRCH4O75427 683 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 GCATO75600 419 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 MPOP05164 745 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 MYF5P13349 255 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 TSHRP16473 764 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 ITPKBP27987 946 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 RBMS1P29558 406 aaKnown RBP13.21□□□□□ -0.29
RTN3-213ENST00000543552 SERPINB6P35237 376 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 C1orf61Q13536 156 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 ZNF235Q14590 738 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 INPP5AQ14642 412 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 CA9Q16790 459 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 ISXQ2M1V0 245 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 WSCD2Q2TBF2 565 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 SOWAHCQ53LP3 525 aaPredicted RBP13.21□□□□□ -0.29
RTN3-213ENST00000543552 BOLA3Q53S33 107 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 TDRD12Q587J7 1177 aaKnown RBP13.21□□□□□ -0.29
RTN3-213ENST00000543552 FIGNQ5HY92 759 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 CAVIN1Q6NZI2 390 aaKnown RBP13.21□□□□□ -0.29
RTN3-213ENST00000543552 IGF2-ASQ6U949 168 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 HID1Q8IV36 788 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 SLC35F3Q8IY50 421 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 OR6C4Q8NGE1 309 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 NSMCE1Q8WV22 266 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 IQCDQ96DY2 449 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 WDR92Q96MX6 357 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 PSKH2Q96QS6 385 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 PEBP4Q96S96 227 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 APOOQ9BUR5 198 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 KCTD5Q9NXV2 234 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 PADI4Q9UM07 663 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 COQ6Q9Y2Z9 468 aa13.21□□□□□ -0.29
RTN3-213ENST00000543552 FASNP49327 2511 aaKnown RBP13.21□□□□□ -0.29
RTN3-213ENST00000543552 CACNB4O00305 520 aaPredicted RBP13.2□□□□□ -0.3
RTN3-213ENST00000543552 DDX3XO00571 662 aaKnown RBP eCLIP13.2□□□□□ -0.36e-22■■■□□ 17.7
RTN3-213ENST00000543552 YY2O15391 372 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 BUB1BO60566 1050 aaPredicted RBP13.2□□□□□ -0.3
RTN3-213ENST00000543552 SOCS5O75159 536 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 PCCBP05166 539 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 ITIH2P19823 946 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 TGM2P21980 687 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 MLLT3P42568 568 aaPredicted RBP13.2□□□□□ -0.3
RTN3-213ENST00000543552 SRP54P61011 504 aaKnown RBP13.2□□□□□ -0.3
RTN3-213ENST00000543552 CCDC173Q0VFZ6 552 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 DPYSQ14117 519 aa13.2□□□□□ -0.3
RTN3-213ENST00000543552 SPIDRQ14159 915 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 498.8 ms