RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 HSFY1Q96LI6 401 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 DUSP16Q9BY84 665 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ZNF395Q9H8N7 513 aaPredicted RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 TMEM30AQ9NV96 361 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ZDHHC7Q9NXF8 308 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 RRN3Q9NYV6 651 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 MALT1Q9UDY8 824 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 SOX13Q9UN79 622 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PCDHGA3Q9Y5H0 932 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PCDHGA11Q9Y5H2 935 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 TK2O00142 265 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ST8SIA5O15466 376 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CST8O60676 142 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 KRT75O95678 551 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 IFNB1P01574 187 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ALOX5P09917 674 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PBLDP30039 288 aaPredicted RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 SSTR1P30872 391 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 FDFT1P37268 417 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 GSSP48637 474 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PTPN5P54829 565 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 GDF10P55107 478 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 OLR1P78380 273 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 OTUD4Q01804 1114 aaKnown RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 MMRN1Q13201 1228 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ZNF124Q15973 351 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CA9Q16790 459 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 TMEM95Q3KNT9 176 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CLEC20AQ6ZU45 233 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 USP43Q70EL4 1123 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 TMEM86AQ8N2M4 240 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 GALNT4Q8N4A0 578 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ZCCHC9Q8N567 271 aaKnown RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PPP4R1Q8TF05 950 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 LINC01599Q8WXQ3 324 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 KCTD13Q8WZ19 329 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 HSPH1Q92598 858 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 FRMD8P1Q9BZ68 369 aaPredicted RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 EHD1Q9H4M9 534 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 RSAD1Q9HA92 442 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 DNAJB4Q9UDY4 337 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PLA2G4CQ9UP65 541 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 RBMX2Q9Y388 322 aaKnown RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 A0A1W2PQ45 241 aaPredicted RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 A0A1W2PQY0 241 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 TYW5A2RUC4 315 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 CASTOR2A6NHX0 329 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 OR6C65A6NJZ3 312 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 MDM4O15151 490 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 GMNNO75496 209 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 POP4O95707 220 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 MT-ND3P03897 115 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 INHAP05111 366 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 CKBP12277 381 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 CPA3P15088 417 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 PCYT1AP49585 367 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 EIF2B2P49770 351 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC18A1P54219 525 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 AQP5P55064 265 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 GPS1Q13098 491 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 PDK1Q15118 436 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 CDO1Q16878 200 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 TIGD5Q53EQ6 642 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 BTBD8Q5XKL5 378 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ARHGAP36Q6ZRI8 547 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 RTN4RL1Q86UN2 441 aaPredicted RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ITIH5Q86UX2 942 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 PIGZQ86VD9 579 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 KCT2Q8NC54 265 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 KCTD6Q8NC69 237 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ACTL9Q8TC94 416 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 PTCD2Q8WV60 388 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 FAF2Q96CS3 445 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ZFRQ96KR1 1074 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 VPS35Q96QK1 796 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 PKMYT1Q99640 499 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ADAM2Q99965 735 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 TMEM121Q9BTD3 319 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 DCUN1D5Q9BTE7 237 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 MRPS26Q9BYN8 205 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 Q9H521 79 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ANLNQ9NQW6 1124 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 THEGQ9P2T0 379 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 PACSIN3Q9UKS6 424 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 TDRD15B5MCY1 1934 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 SH3PXD2BA1X283 911 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 HNRNPCL2B2RXH8 293 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 F8W810 466 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 I3L4J1 428 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 APOC4-APOC2K7ER74 178 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 B4GALT3O60512 393 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 APOC2P02655 101 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ABHD2P08910 425 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 MTHFD1P11586 935 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 LCP1P13796 627 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 NPR3P17342 541 aa8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 NELFEP18615 380 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-221ENST00000542407 ATF6P18850 670 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms