RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 DUOXA1Q1HG43 343 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 ZNF567Q8N184 647 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 CXorf40AQ8TE69 158 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 PDCD6IPQ8WUM4 868 aaKnown RBP18.9■□□□□ 0.62
VPS33A-205ENST00000541169 LRRN4Q8WUT4 740 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 RTP4Q96DX8 246 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 SCRN2Q96FV2 425 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 GBA3Q9H227 469 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 PCDH9Q9HC56 1237 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 RSPH14Q9UHP6 348 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 RAPGEFL1Q9UHV5 662 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 FEZ2Q9UHY8 353 aaPredicted RBP18.9■□□□□ 0.62
VPS33A-205ENST00000541169 ZNF148Q9UQR1 794 aa18.9■□□□□ 0.62
VPS33A-205ENST00000541169 TNRC6BQ9UPQ9 1833 aaKnown RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 A0A1B0GTW7 788 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 TCRBV7S2A1N4TA0A589 114 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 PRAMEF26H0Y7S4 382 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 PLK4O00444 970 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 IGHV4-34P06331 123 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 AFF3P51826 1226 aaKnown RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 GEMP55040 296 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 ETF1P62495 437 aaKnown RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 RACK1P63244 317 aaKnown RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 NIPAL4Q0D2K0 466 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 OVGP1Q12889 678 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 TRAF2Q12933 501 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 TEAD4Q15561 434 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 OASLQ15646 514 aaKnown RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 LPAL2Q16609 132 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 TMEM259Q4ZIN3 620 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 PLA2G2CQ5R387 149 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 ANKRD20A2Q5SQ80 823 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 ANKRD20A1Q5TYW2 823 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 ANKRD20A3Q5VUR7 823 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 DPPA4Q7L190 304 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 SNX19Q92543 992 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 PIGKQ92643 395 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 IFT43Q96FT9 208 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 MCCC1Q96RQ3 725 aaPredicted RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 C1QTNF2Q9BXJ5 285 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 PCDH12Q9NPG4 1184 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 R3HDM2Q9Y2K5 976 aaKnown RBP18.89■□□□□ 0.61
VPS33A-205ENST00000541169 SAR1BQ9Y6B6 198 aa18.89■□□□□ 0.61
VPS33A-205ENST00000541169 A0A1W2PQU0 124 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 PSMD11O00231 422 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 TOR1BO14657 336 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 BCAT2O15382 392 aaPredicted RBP18.88■□□□□ 0.61
VPS33A-205ENST00000541169 PSMD3O43242 534 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 MAGEC1O60732 1142 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 MMP2P08253 660 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ZNF806P0C7X5 589 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ZNF30P17039 623 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ITPKAP23677 461 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 MMP12P39900 470 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ABL2P42684 1182 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 FAM193AP78312 1265 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 CDK18Q07002 472 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 AGERQ15109 404 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 CSRP2Q16527 193 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 PARP6Q2NL67 630 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ZNF284Q2VY69 593 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ARHGEF18Q6ZSZ5 1173 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 DENND6BQ8NEG7 585 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 PIH1D2Q8WWB5 315 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 LENG8Q96PV6 779 aaPredicted RBP18.88■□□□□ 0.61
VPS33A-205ENST00000541169 RBM15Q96T37 977 aaKnown RBP eCLIP18.88■□□□□ 0.61
VPS33A-205ENST00000541169 HINFPQ9BQA5 517 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 TMEM121Q9BTD3 319 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 SLC17A9Q9BYT1 436 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ZDHHC5Q9C0B5 715 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ARRDC1-AS1Q9H2J1 176 aa18.88■□□□□ 0.61
VPS33A-205ENST00000541169 EIF2B4Q9UI10 523 aaKnown RBP18.88■□□□□ 0.61
VPS33A-205ENST00000541169 ERI2A8K979 691 aaKnown RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 KIF2AO00139 706 aaPredicted RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 KHNYNO15037 678 aaKnown RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 GJB3O75712 270 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 TM7SF2O76062 418 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 NFKB1P19838 968 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 HNRNPA2B1P22626 353 aaKnown RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 AKT2P31751 481 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 CD68P34810 354 aaPredicted RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 SIX1Q15475 284 aaPredicted RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 NAPEPLDQ6IQ20 393 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 SLC23A3Q6PIS1 610 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 ARMCX6Q7L4S7 300 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 ADAT2Q7Z6V5 191 aaKnown RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 IQCHQ86VS3 1027 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 DEFB119Q8N690 84 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 CCDC89Q8N998 374 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 FAM71DQ8N9W8 422 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 WDR24Q96S15 920 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 LYSMD1Q96S90 227 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 FSD1LQ9BXM9 530 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 NUSAP1Q9BXS6 441 aaKnown RBP18.87■□□□□ 0.61
VPS33A-205ENST00000541169 CEP41Q9BYV8 373 aa18.87■□□□□ 0.61
VPS33A-205ENST00000541169 A0A0J9YYE9 177 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 TTC24A2A3L6 582 aaPredicted RBP18.86■□□□□ 0.61
VPS33A-205ENST00000541169 ANKRD66B4E2M5 251 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 GFRA3O60609 400 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 NDST3O95803 873 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms