RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 BCL2L1Q07817 233 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 SGCGQ13326 291 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 FZD2Q14332 565 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 ZNF235Q14590 738 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 IHHQ14623 411 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 MARC1Q5VT66 337 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 KDM7AQ6ZMT4 941 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 TMEM139Q8IV31 216 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 SLC25A45Q8N413 288 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 WRAP53Q9BUR4 548 aaKnown RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 CAAP1Q9H8G2 361 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 MBNL1Q9NR56 388 aaKnown RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 SALL4Q9UJQ4 1053 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 TFR2Q9UP52 801 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 REXO2Q9Y3B8 237 aaKnown RBP14.3□□□□□ -0.12
USP28-209ENST00000540925 PCDHB9Q9Y5E1 797 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 PCDHA13Q9Y5I0 950 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 SHROOM3Q8TF72 1996 aa14.3□□□□□ -0.12
USP28-209ENST00000540925 RCCD1A6NED2 376 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 SOWAHDA6NJG2 315 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 FPGTO14772 594 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 MATN3O15232 486 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 TNFSF14O43557 240 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 TM7SF2O76062 418 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 C6P13671 934 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 COMTP21964 271 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 TRAF2Q12933 501 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 FOXC1Q12948 553 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 IFI16Q16666 785 aaKnown RBP14.29□□□□□ -0.12
USP28-209ENST00000540925 INAVAQ3KP66 663 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 DPPA4Q7L190 304 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 PTAR1Q7Z6K3 402 aaPredicted RBP14.29□□□□□ -0.12
USP28-209ENST00000540925 CBARPQ8N350 705 aaPredicted RBP14.29□□□□□ -0.12
USP28-209ENST00000540925 CXorf40AQ8TE69 158 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 HDAC11Q96DB2 347 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 OLFM3Q96PB7 478 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 SCNM1Q9BWG6 230 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 AMACRQ9UHK6 382 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 KLF15Q9UIH9 416 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 PNMA8BQ9ULN7 279 aaPredicted RBP14.29□□□□□ -0.12
USP28-209ENST00000540925 PPIL1Q9Y3C6 166 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 HYOU1Q9Y4L1 999 aa14.29□□□□□ -0.12
USP28-209ENST00000540925 EPN1Q9Y6I3 576 aaPredicted RBP14.29□□□□□ -0.12
USP28-209ENST00000540925 ANKRD11Q6UB99 2663 aaPredicted RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 LRRD1A4D1F6 860 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 TOR1BO14657 336 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 HYAL3O43820 417 aaPredicted RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 FZD6O60353 706 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 PIAS2O75928 621 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 NDUFA10O95299 355 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 MAP3K6O95382 1288 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 PRKCGP05129 697 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 ITGAVP06756 1048 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 NME1P15531 152 aaKnown RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 SPINK2P20155 84 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 MX2P20592 715 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 DGKAP23743 735 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 CDC25BP30305 580 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 LIG3P49916 1009 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 MAXP61244 160 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 YPEL5P62699 121 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 POLR2LP62875 67 aaKnown RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 PPIDQ08752 370 aaKnown RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 WSCD2Q2TBF2 565 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 ERAP2Q6P179 960 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 RAD9BQ6WBX8 426 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 LIPIQ6XZB0 460 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 TMTC1Q8IUR5 882 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 RHOT1Q8IXI2 618 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 MCCC1Q96RQ3 725 aaPredicted RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 UCKL1Q9NWZ5 548 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 COQ6Q9Y2Z9 468 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 NEUROG3Q9Y4Z2 214 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 PCDHGC4Q9Y5F7 938 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 ALG6Q9Y672 507 aa14.28□□□□□ -0.12
USP28-209ENST00000540925 FASNP49327 2511 aaKnown RBP14.28□□□□□ -0.12
USP28-209ENST00000540925 A0A1W2PQ67 120 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 PSTPIP1O43586 416 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 PGLSO95336 258 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 CSF2P04141 144 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 XPAP23025 273 aaPredicted RBP14.27□□□□□ -0.13
USP28-209ENST00000540925 CYLC1P35663 651 aaPredicted RBP14.27□□□□□ -0.13
USP28-209ENST00000540925 CDKN2BP42772 138 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 SEMG2Q02383 582 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 EIF2B5Q13144 721 aaKnown RBP14.27□□□□□ -0.13
USP28-209ENST00000540925 LRRC14Q15048 493 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 IRF4Q15306 451 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 PROX2Q3B8N5 592 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 CFAP58Q5T655 872 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 TIGD7Q6NT04 549 aaPredicted RBP14.27□□□□□ -0.13
USP28-209ENST00000540925 C11orf63Q6NUN7 778 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 MFSD7Q6UXD7 560 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 PARGQ86W56 976 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 BBS5Q8N3I7 341 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 CHCHD4Q8N4Q1 142 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 PNPLA1Q8N8W4 532 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 ARRDC2Q8TBH0 407 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 LRRN4Q8WUT4 740 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 NSMCE1Q8WV22 266 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 GATA6Q92908 595 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms