RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 APOOQ9BUR5 198 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 SEMA4CQ9C0C4 833 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 STRADBQ9C0K7 418 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 VPS16Q9H269 839 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 PDFQ9HBH1 243 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 NLRC4Q9NPP4 1024 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 GULP1Q9UBP9 304 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 ATXN7L1Q9ULK2 861 aaPredicted RBP12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 FZD10Q9ULW2 581 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 SIK3Q9Y2K2 1263 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 DGKBQ9Y6T7 804 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 MGAQ8IWI9 3026 aa12.11□□□□□ -0.47
CBX3P4-202ENST00000540428 ZNF462Q96JM2 2506 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 PMS2P1A4D2B8 440 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 D6RAR5 112 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 EPHB6O15197 1021 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 INSIG1O15503 277 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CREB3O43889 395 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 PIGNO95427 931 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 DESP17661 470 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 MMP12P39900 470 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CSNK1DP48730 415 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 NDST2P52849 883 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 SRP54P61011 504 aaKnown RBP12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 INPP5AQ14642 412 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 SYCP1Q15431 976 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CFAP58Q5T655 872 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 DNAJC24Q6P3W2 148 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 SCYL2Q6P3W7 929 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 MON1BQ7L1V2 547 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 FBXO39Q8N4B4 442 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 KYQ8NBH2 561 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 NETO2Q8NC67 525 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 TSACCQ96A04 125 aaPredicted RBP12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CCDC74AQ96AQ1 378 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 EXOC2Q96KP1 924 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 WDR92Q96MX6 357 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CCNL2Q96S94 520 aaPredicted RBP12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 RBM15Q96T37 977 aaKnown RBP eCLIP12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CNPY3Q9BT09 278 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 LRRC19Q9H756 370 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 SYNDIG1Q9H7V2 258 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 PCDH12Q9NPG4 1184 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 CHMP5Q9NZZ3 219 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 SIRPGQ9P1W8 387 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 KLQ9UEF7 1012 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 GPR34Q9UPC5 381 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 ATP8A1Q9Y2Q0 1164 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 COQ6Q9Y2Z9 468 aa12.1□□□□□ -0.47
CBX3P4-202ENST00000540428 A0A1W2PQM1 296 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 EIF3CLB5ME19 914 aaKnown RBP12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 CASC3O15234 703 aaKnown RBP12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 PRAMEF11O60813 436 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 TNFP01375 233 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 RPLP0P05388 317 aaKnown RBP12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 HOXC4P09017 264 aaPredicted RBP12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 PNLIPP16233 465 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 KELP23276 732 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 UGT1A5P35504 534 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 LIG3P49916 1009 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 INHBCP55103 352 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 KIAA1024LP59773 190 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 CCL7P80098 99 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 LY6DQ14210 128 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 PPP1R15BQ5SWA1 713 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 OGFOD3Q6PK18 319 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 XKR5Q6UX68 686 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 RAB11FIP2Q7L804 512 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 B3GNT8Q7Z7M8 397 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 GPR156Q8NFN8 814 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 TMEM159Q96B96 161 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 MCEEQ96PE7 176 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 EIF3CQ99613 913 aaKnown RBP12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 LRRN3Q9H3W5 708 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 ATP13A3Q9H7F0 1226 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 EPB41L5Q9HCM4 733 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 RABGEF1Q9UJ41 708 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 APPL1Q9UKG1 709 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 OR1A2Q9Y585 309 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 COL6A6A6NMZ7 2263 aa12.09□□□□□ -0.47
CBX3P4-202ENST00000540428 RP1P56715 2156 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 CFAP46Q8IYW2 2715 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 TNFRSF10CO14798 259 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 BUB1BO60566 1050 aaPredicted RBP12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 GLB1P16278 677 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 SERPINA4P29622 427 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 SLC5A2P31639 672 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 TPI1P60174 286 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 RPL7AP62424 266 aaKnown RBP12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 RFTN1Q14699 578 aaPredicted RBP12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 ZSCAN23Q3MJ62 389 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 KIAA1614Q5VZ46 1190 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 PPP1R2P3Q6NXS1 205 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 RD3Q7Z3Z2 195 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 ZSWIM9Q86XI8 627 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 CAMK1DQ8IU85 385 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 NEK11Q8NG66 645 aa12.08□□□□□ -0.48
CBX3P4-202ENST00000540428 OR56A4Q8NGH8 313 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms