RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NUDCD1Q96RS6 583 aa14.9□□□□□ -0.02
USP28-204ENST00000537642 NOD2Q9HC29 1040 aa14.9□□□□□ -0.02
USP28-204ENST00000537642 SCUBE2Q9NQ36 999 aa14.9□□□□□ -0.02
USP28-204ENST00000537642 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.89□□□□□ -0.03
USP28-204ENST00000537642 TRIM38O00635 465 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 HTRA2O43464 458 aaPredicted RBP14.89□□□□□ -0.03
USP28-204ENST00000537642 PIAS2O75928 621 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 LCA5LO95447 670 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 MMP13P45452 471 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 LIG3P49916 1009 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 GBE1Q04446 702 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 SLC10A2Q12908 348 aaPredicted RBP14.89□□□□□ -0.03
USP28-204ENST00000537642 RALGDSQ12967 914 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 DNAJC3Q13217 504 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 PDE1CQ14123 709 aaPredicted RBP14.89□□□□□ -0.03
USP28-204ENST00000537642 IRF4Q15306 451 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 WSCD2Q2TBF2 565 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 ZFYVE27Q5T4F4 411 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 UNQ6494/PRO21346Q6UXR6 183 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 BBS5Q8N3I7 341 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 MRFAP1L1Q96HT8 127 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 RNF157Q96PX1 679 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 C1QTNF7Q9BXJ2 289 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 NT5MQ9NPB1 228 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 DNAJC28Q9NX36 388 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 KLF15Q9UIH9 416 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 PCDHGC4Q9Y5F7 938 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 AKAP13Q12802 2813 aa14.89□□□□□ -0.03
USP28-204ENST00000537642 EPG5Q9HCE0 2579 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 KNTC1P50748 2209 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 LRRD1A4D1F6 860 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 C3orf70A6NLC5 250 aaPredicted RBP14.88□□□□□ -0.03
USP28-204ENST00000537642 SOCS5O75159 536 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 CSF2P04141 144 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 GIMD1P0DJR0 217 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 NME1P15531 152 aaKnown RBP14.88□□□□□ -0.03
USP28-204ENST00000537642 MAGEA1P43355 309 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 ACADVLP49748 655 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 POLR2LP62875 67 aaKnown RBP14.88□□□□□ -0.03
USP28-204ENST00000537642 TRAF2Q12933 501 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 EIF2B5Q13144 721 aaKnown RBP14.88□□□□□ -0.03
USP28-204ENST00000537642 LRRC14Q15048 493 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 IFI16Q16666 785 aaKnown RBP14.88□□□□□ -0.03
USP28-204ENST00000537642 CCDC157Q569K6 752 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 LIPIQ6XZB0 460 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 PARGQ86W56 976 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 PAF1Q8N7H5 531 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 LRRN4Q8WUT4 740 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 SPOCK2Q92563 424 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 MAML1Q92585 1016 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 TSGA13Q96PP4 275 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 HYOU1Q9Y4L1 999 aa14.88□□□□□ -0.03
USP28-204ENST00000537642 CFAP69A5D8W1 941 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 ZNF487B1APH4 448 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 MATN3O15232 486 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 FFAR2O15552 330 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 SIGLEC6O43699 453 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 LZTS3O60299 673 aaPredicted RBP14.87□□□□□ -0.03
USP28-204ENST00000537642 PROS1P07225 676 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 GM2AP17900 193 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 CCNCP24863 283 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 SLC1A1P43005 524 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 HNRNPKP61978 463 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP28-204ENST00000537642 YPEL5P62699 121 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 AGERQ15109 404 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PROX2Q3B8N5 592 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 RALGPS1Q5JS13 557 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 LRRC38Q5VT99 294 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 TIGD7Q6NT04 549 aaPredicted RBP14.87□□□□□ -0.03
USP28-204ENST00000537642 DHRS13Q6UX07 377 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 CCNI2Q6ZMN8 369 aaPredicted RBP14.87□□□□□ -0.03
USP28-204ENST00000537642 DPPA4Q7L190 304 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 TMPRSS7Q7RTY8 843 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 CCDC170Q8IYT3 715 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PLD5Q8N7P1 536 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 OR4C6Q8NH72 309 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PDCD6IPQ8WUM4 868 aaKnown RBP14.87□□□□□ -0.03
USP28-204ENST00000537642 FATE1Q969F0 183 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PANX2Q96RD6 677 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 DTLQ9NZJ0 730 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 B4GALT6Q9UBX8 382 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PNMA8BQ9ULN7 279 aaPredicted RBP14.87□□□□□ -0.03
USP28-204ENST00000537642 TFR2Q9UP52 801 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PCDHGA1Q9Y5H4 931 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 PCDHA13Q9Y5I0 950 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 WDFY3Q8IZQ1 3526 aa14.87□□□□□ -0.03
USP28-204ENST00000537642 A0A1W2PQ67 120 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 A8MX80 341 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 TOR1BO14657 336 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 CPP00450 1065 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 KRT1P04264 644 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 TNNT1P13805 278 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 JUNDP17535 347 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 CKMT2P17540 419 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 MX2P20592 715 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 COMTP21964 271 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 FECHP22830 423 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 THOP1P52888 689 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 HADHBP55084 474 aaKnown RBP14.86□□□□□ -0.03
USP28-204ENST00000537642 ZNF211Q13398 564 aaPredicted RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms