RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 UNC5AQ6ZN44 842 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 ADIPOR2Q86V24 386 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 CHSY1Q86X52 802 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 LRRC34Q8IZ02 419 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 KCNV2Q8TDN2 545 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 MZB1Q8WU39 189 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 SLC44A1Q8WWI5 657 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 AZIN2Q96A70 460 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 SGSM3Q96HU1 749 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 DUSP15Q9H1R2 295 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 SMOC1Q9H4F8 434 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 GMEB2Q9UKD1 530 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 CHD5Q8TDI0 1954 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 FGF10O15520 208 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 C1QAP02745 245 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 VIMP08670 466 aaKnown RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 HLA-EP13747 358 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 KRT4P19013 534 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 NDUFV2P19404 249 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 TACR2P21452 398 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 HTR7P34969 479 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 SLC18A1P54219 525 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 MANEALQ5VSG8 457 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 GKAP1Q5VSY0 366 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 LAIR1Q6GTX8 287 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 LRRC8BQ6P9F7 803 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 CHST9Q7L1S5 443 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 TRMT11Q7Z4G4 463 aaKnown RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 SRLQ86TD4 932 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 CACUL1Q86Y37 369 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 MFN1Q8IWA4 741 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 HOMEZQ8IX15 550 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 CARNMT1Q8N4J0 409 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 GSDMBQ8TAX9 411 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 CKAP2Q8WWK9 683 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 TBC1D31Q96DN5 1066 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 CELF6Q96J87 481 aaKnown RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 BTN2A3PQ96KV6 586 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 GABRG3Q99928 467 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 TRIM56Q9BRZ2 755 aaKnown RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 SLC2A11Q9BYW1 496 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 THAP10Q9P2Z0 257 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-208ENST00000537004 GGA2Q9UJY4 613 aa12.07□□□□□ -0.48
CLIP1-208ENST00000537004 ALDH1A2O94788 518 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 RETP07949 1114 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 INHBAP08476 426 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 PABPC1P11940 636 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 PRKCHP24723 683 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 ZBTB17Q13105 803 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 FUT11Q495W5 492 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 USP39Q53GS9 565 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MPP7Q5T2T1 576 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 RNF43Q68DV7 783 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SDE2Q6IQ49 451 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 LRRC6Q86X45 466 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SPATS2Q86XZ4 545 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 CTAGE3PQ8IX95 158 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 HJURPQ8NCD3 748 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 STAMBPL1Q96FJ0 436 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SEC16BQ96JE7 1060 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 LMLNQ96KR4 655 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 GORASP1Q9BQQ3 440 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MKRN2Q9H000 416 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 ARRDC1-AS1Q9H2J1 176 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 CATSPERBQ9H7T0 1116 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SSU72Q9NP77 194 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 INTS6Q9UL03 887 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 IQANK1A0A1B0GTG1 560 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SDR42E2A6NKP2 422 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 TCP11X1B4DZS4 312 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 ZBTB24O43167 697 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 TYROBPO43914 113 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SLC2A3P11169 496 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 CA4P22748 312 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 RPA3P35244 121 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 WDR4P57081 412 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 LMAN2Q12907 356 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 PTPRNQ16849 979 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 ARTNQ5T4W7 220 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 FBXL22Q6P050 247 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 CASC4Q6P4E1 433 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MICALCLQ6ZW33 695 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 C14orf80Q86SX3 495 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 SLC26A11Q86WA9 606 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 PPM1NQ8N819 430 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 ATP6V0D2Q8N8Y2 350 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 DENND1AQ8TEH3 1009 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 IGSF8Q969P0 613 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MRGPRX1Q96LB2 322 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 AGAP3Q96P47 875 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 VAT1Q99536 393 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 GBA3Q9H227 469 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MTG2Q9H4K7 406 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 PIH1D1Q9NWS0 290 aaKnown RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MBD1Q9UIS9 605 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-208ENST00000537004 TRHDEQ9UKU6 1024 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 HS3ST4Q9Y661 456 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 EML5Q05BV3 1969 aa12.06□□□□□ -0.48
CLIP1-208ENST00000537004 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 CXorf49A8MYA2 514 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms