RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ADAMTS4O75173 837 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 IPO13O94829 963 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 RHOQP17081 205 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 XRCC1P18887 633 aaPredicted RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 KCNA5P22460 613 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 TBC1D25Q3MII6 688 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 GLB1LQ6UWU2 654 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 RPS27LQ71UM5 84 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 LDB1Q86U70 411 aaPredicted RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 ZNF598Q86UK7 904 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 OR13J1Q8NGT2 312 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 PHF21BQ96EK2 531 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 TMA16Q96EY4 203 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 MAELQ96JY0 434 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 RANBP9Q96S59 729 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 NPAS2Q99743 824 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 ZCWPW1Q9H0M4 648 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 FBXO44Q9H4M3 255 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 EML4Q9HC35 981 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 ATP13A1Q9HD20 1204 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 PRDM5Q9NQX1 630 aaPredicted RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 VPS45Q9NRW7 570 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 GMIPQ9P107 970 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 GABRQQ9UN88 632 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 PSMD13Q9UNM6 376 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 VWA8A3KMH1 1905 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 CASQ2O14958 399 aaPredicted RBP13.23□□□□□ -0.29
LDLR-203ENST00000535915 OR1G1P47890 313 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 ALDH1A3P47895 512 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 USP46P62068 366 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 MRPS22P82650 360 aaKnown RBP13.23□□□□□ -0.29
LDLR-203ENST00000535915 PFKPQ01813 784 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 SULT2A1Q06520 285 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 CEACAM7Q14002 265 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 HECTD2Q5U5R9 776 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 MSANTD2Q6P1R3 559 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 CILP2Q8IUL8 1156 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 PQLC1Q8N2U9 271 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 ICA1LQ8NDH6 482 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 GPR152Q8TDT2 470 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 GBP5Q96PP8 586 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 ARHGAP39Q9C0H5 1083 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 TMEM248Q9NWD8 314 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 VPS28Q9UK41 221 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 STX16-NPEPL1H3BU86 382 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 TXNDC9O14530 226 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 PYGLP06737 847 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 MMP2P08253 660 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 RBP1P09455 135 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 ETFBP38117 255 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 DPP6P42658 865 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 PRAMEP78395 509 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 MMEL1Q495T6 779 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 MIB1Q86YT6 1006 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 ZNF683Q8IZ20 524 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 AFAP1L2Q8N4X5 818 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 EZH1Q92800 747 aaPredicted RBP13.23□□□□□ -0.29
LDLR-203ENST00000535915 HDAC10Q969S8 669 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 C6orf203Q9P0P8 240 aaPredicted RBP13.23□□□□□ -0.29
LDLR-203ENST00000535915 UXTQ9UBK9 157 aaPredicted RBP13.23□□□□□ -0.29
LDLR-203ENST00000535915 BCAP29Q9UHQ4 241 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 PRG3Q9Y2Y8 225 aaPredicted RBP13.23□□□□□ -0.29
LDLR-203ENST00000535915 HTTP42858 3142 aa13.23□□□□□ -0.29
LDLR-203ENST00000535915 TCAF2A6NFQ2 919 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 TBX18O95935 607 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 VCLP18206 1134 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 ME2P23368 584 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 ATXN3P54252 364 aaPredicted RBP13.22□□□□□ -0.29
LDLR-203ENST00000535915 IHHQ14623 411 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 NFE2Q16621 373 aaPredicted RBP13.22□□□□□ -0.29
LDLR-203ENST00000535915 EML3Q32P44 896 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 SIRPB2Q5JXA9 342 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 FOXB2Q5VYV0 432 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 RAP1GAP2Q684P5 730 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 GK5Q6ZS86 529 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 ARHGAP18Q8N392 663 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 GALNT15Q8N3T1 639 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 ATP6V0D2Q8N8Y2 350 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 BHLHE22Q8NFJ8 381 aaPredicted RBP13.22□□□□□ -0.29
LDLR-203ENST00000535915 ANKRD49Q8WVL7 239 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 VWA7Q9Y334 891 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 DTNAQ9Y4J8 743 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 GREB1Q4ZG55 1949 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 PEX1O43933 1283 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 OAZ2O95190 189 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 PAPSS2O95340 614 aaPredicted RBP13.22□□□□□ -0.29
LDLR-203ENST00000535915 HMBSP08397 361 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 MS4A2Q01362 244 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 ACAP2Q15057 778 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 CUZD1Q86UP6 607 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 PELI3Q8N2H9 469 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 B4GALNT2Q8NHY0 566 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 SPPL2BQ8TCT7 592 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 IGSF8Q969P0 613 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 FUBP3Q96I24 572 aaKnown RBP eCLIP13.22□□□□□ -0.29
LDLR-203ENST00000535915 FAR2Q96K12 515 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 LRGUKQ96M69 825 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 TRAPPC9Q96Q05 1148 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 PIDD1Q9HB75 910 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 TNFRSF12AQ9NP84 129 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms