RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SLC6A18Q96N87 628 aa8.37□□□□□ -1.07
NEDD8-207ENST00000533242 RSPH9Q9H1X1 276 aaPredicted RBP8.37□□□□□ -1.07
NEDD8-207ENST00000533242 SLC40A1Q9NP59 571 aa8.37□□□□□ -1.07
NEDD8-207ENST00000533242 KCNK9Q9NPC2 374 aa8.37□□□□□ -1.07
NEDD8-207ENST00000533242 METTL5Q9NRN9 209 aaKnown RBP8.37□□□□□ -1.07
NEDD8-207ENST00000533242 OLA1Q9NTK5 396 aaKnown RBP8.37□□□□□ -1.07
NEDD8-207ENST00000533242 PCSK1NQ9UHG2 260 aa8.37□□□□□ -1.07
NEDD8-207ENST00000533242 STOML2Q9UJZ1 356 aa8.37□□□□□ -1.07
NEDD8-207ENST00000533242 HBS1LQ9Y450 684 aaKnown RBP8.37□□□□□ -1.07
NEDD8-207ENST00000533242 CCT8L1PA6NM43 557 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 H0YHG0 523 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 SNX3O60493 162 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TCEA3O75764 348 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TJP3O95049 919 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 ATP5BP06576 529 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 DLDP09622 509 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 KRT3P12035 628 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 PSMA2P25787 234 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 FOXN2P32314 431 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 HARS2P49590 506 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 WDR4P57081 412 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 OTUD4Q01804 1114 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CFHR1Q03591 330 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 DNAJC3Q13217 504 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 EFTUD2Q15029 972 aaKnown RBP eCLIP8.36□□□□□ -1.071e-8■■■□□ 18.3
NEDD8-207ENST00000533242 TMED2Q15363 201 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 LRRC38Q5VT99 294 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TAOK1Q7L7X3 1001 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TAX1BP1Q86VP1 789 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 XYLT1Q86Y38 959 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 RELL1Q8IUW5 271 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 NIPA2Q8N8Q9 360 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 ACTL9Q8TC94 416 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 FGF11Q92914 225 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TMEM176AQ96HP8 235 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 PEBP4Q96S96 227 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 HOMER3Q9NSC5 361 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 ABCB8Q9NUT2 735 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 LGALS13Q9UHV8 139 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 GRID1Q9ULK0 1009 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TPX2Q9ULW0 747 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 ASPMQ8IZT6 3477 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 A0A1W2PR77 199 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 C10orf142B7Z368 130 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 J3QKU1 62 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CBX4O00257 560 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CST8O60676 142 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 SPAG7O75391 227 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 WNT1P04628 370 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 POLR2EP19388 210 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 EPHA8P29322 1005 aaPredicted RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CCR5P51681 352 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CLDN6P56747 220 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 GPX6P59796 221 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CAV1Q03135 178 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 MGAT5Q09328 741 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 MMRN1Q13201 1228 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 PIGHQ14442 188 aaPredicted RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 LACTB2Q53H82 288 aaPredicted RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 SLC45A4Q5BKX6 768 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 NUGGCQ68CJ6 796 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 PM20D1Q6GTS8 502 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 DRICH1Q6PGQ1 229 aaPredicted RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 CYP4V2Q6ZWL3 525 aaPredicted RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 ANKMY2Q8IV38 441 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 OXR1Q8N573 874 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 EID2Q8N6I1 236 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 OR2T34Q8NGX1 318 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 UBA3Q8TBC4 463 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 GANCQ8TET4 914 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 TMA16Q96EY4 203 aaKnown RBP8.36□□□□□ -1.07
NEDD8-207ENST00000533242 WBP1Q96G27 269 aa8.36□□□□□ -1.07
NEDD8-207ENST00000533242 LRRC72A6NJI9 287 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 SIGLEC16A6NMB1 481 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 POC1B-GALNT4F8VUJ3 575 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 HGSO14964 777 aaPredicted RBP8.35□□□□□ -1.07
NEDD8-207ENST00000533242 RNASEH1O60930 286 aaKnown RBP8.35□□□□□ -1.07
NEDD8-207ENST00000533242 CDH16O75309 829 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 TMEM63AO94886 807 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 CD38P28907 300 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 PTPN7P35236 360 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 FAM133BQ5BKY9 247 aaKnown RBP8.35□□□□□ -1.07
NEDD8-207ENST00000533242 FNBP1LQ5T0N5 605 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 ADGRF1Q5T601 910 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 ARHGAP17Q68EM7 881 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 NPNTQ6UXI9 565 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 CROCCP2Q86T23 111 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 PIGZQ86VD9 579 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 UNC45BQ8IWX7 931 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 ZBED8Q8IZ13 594 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 TTC39CQ8N584 583 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 ZNF557Q8N988 423 aaPredicted RBP8.35□□□□□ -1.07
NEDD8-207ENST00000533242 LRRN4Q8WUT4 740 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 CKAP2Q8WWK9 683 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 RMDN2Q96LZ7 410 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 HEXIM2Q96MH2 286 aaKnown RBP8.35□□□□□ -1.07
NEDD8-207ENST00000533242 STMN4Q9H169 189 aaPredicted RBP8.35□□□□□ -1.07
NEDD8-207ENST00000533242 ERVMER34-1Q9H9K5 563 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 FBXL12Q9NXK8 326 aa8.35□□□□□ -1.07
NEDD8-207ENST00000533242 FZD4Q9ULV1 537 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms