RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SNX32Q86XE0 403 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CCDC50Q8IVM0 306 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 KLHL7Q8IXQ5 586 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ZDHHC14Q8IZN3 488 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 THEM5Q8N1Q8 247 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PLD6Q8N2A8 252 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 LRRC43Q8N309 656 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 RASGEF1CQ8N431 466 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ARFGAP1Q8N6T3 406 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SPATA4Q8NEY3 305 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ZMIZ2Q8NF64 920 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 FLCNQ8NFG4 579 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 MYCBPAPQ8TBZ2 947 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SPATA18Q8TC71 538 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ACTRT1Q8TDG2 376 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 RXFP2Q8WXD0 754 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ANKRD7Q92527 254 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 FAM149B1Q96BN6 582 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SMARCD1Q96GM5 515 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 HSFY1Q96LI6 401 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CFAP57Q96MR6 1250 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PGLYRP2Q96PD5 576 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TUBGCP5Q96RT8 1024 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 KCNK16Q96T55 309 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PNKPQ96T60 521 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 KRT12Q99456 494 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PKMYT1Q99640 499 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ACBD6Q9BR61 282 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 COLEC11Q9BWP8 271 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 VN1R3Q9BXE9 311 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 MRPL9Q9BYD2 267 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 ACE2Q9BYF1 805 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 ULBP1Q9BZM6 244 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 DDX47Q9H0S4 455 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 CARD9Q9H257 536 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CWH43Q9H720 699 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ANKZF1Q9H8Y5 726 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GPATCH2LQ9NWQ4 482 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GPRC5BQ9NZH0 403 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 WDR35Q9P2L0 1181 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ZC3H7BQ9UGR2 993 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 SUN2Q9UH99 717 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PCSK1NQ9UHG2 260 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PRSS50Q9UI38 385 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TMEM59LQ9UK28 342 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ADAM28Q9UKQ2 775 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 NR2E1Q9Y466 385 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ASB1Q9Y576 335 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PCDHA3Q9Y5H8 950 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TDRD6O60522 2096 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 TRPM6Q9BX84 2022 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GON4LQ3T8J9 2241 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ACACBO00763 2458 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CEP192Q8TEP8 1941 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SF3B1O75533 1304 aaKnown RBP eCLIP4.28□□□□□ -1.72
CD44-226ENST00000527889 TP53BP1Q12888 1972 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 SYNJ2BP-COX16A0A087WUM0 186 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TCRBV5S2A0A599 114 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ARHGEF37A1IGU5 675 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 LRRD1A4D1F6 860 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ZSCAN5CA6NGD5 496 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 C2CD4BA6NLJ0 364 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 HHLA1C9JL84 531 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SYN3O14994 580 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RAD51CO43502 376 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 LRCH4O75427 683 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 DAB1O75553 588 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SOAT2O75908 522 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TRUB2O95900 331 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 AMHP03971 560 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RALAP11233 206 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 MYF5P13349 255 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 PDGFRAP16234 1089 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SYN1P17600 705 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TNFSF4P23510 183 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 CYP2F1P24903 491 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TACR1P25103 407 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 AOAHP28039 575 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 MIPP30301 263 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 IL12RB1P42701 662 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SLC1A1P43005 524 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 KIR2DL1P43626 348 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 KIR2DL2P43627 348 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 ACADSBP45954 432 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RPL34P49207 117 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 TKTL1P51854 596 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ATXN1P54253 815 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 SLC8A3P57103 927 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 DAOAP59103 153 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 VSNL1P62760 191 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 PITX1P78337 314 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 DSC2Q02487 901 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SLC25A11Q02978 314 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 ITIH3Q06033 890 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ADCY2Q08462 1091 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 DMTNQ08495 405 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 MALLQ13021 153 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SNX1Q13596 522 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SPIDRQ14159 915 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms