RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FOXP3Q9BZS1 431 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 PCDH12Q9NPG4 1184 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.78■■□□□ 1.4
CPSF1-202ENST00000527827 DACH1Q9UI36 760 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 ATXN7L1Q9ULK2 861 aaPredicted RBP23.78■■□□□ 1.4
CPSF1-202ENST00000527827 PCDHGA7Q9Y5G6 932 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 WASH4PA8MWX3 477 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 PYCARD-AS1I3L0S3 204 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 EPHB6O15197 1021 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 RPLP0P05388 317 aaKnown RBP23.77■■□□□ 1.4
CPSF1-202ENST00000527827 SRP54P61011 504 aaKnown RBP23.77■■□□□ 1.4
CPSF1-202ENST00000527827 POLR2FP61218 127 aaKnown RBP23.77■■□□□ 1.4
CPSF1-202ENST00000527827 EIF3IQ13347 325 aaKnown RBP23.77■■□□□ 1.4
CPSF1-202ENST00000527827 INPP5AQ14642 412 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 AGERQ15109 404 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 UGP2Q16851 508 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 RAB11FIP2Q7L804 512 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 SELENOOQ9BVL4 669 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 SUV39H2Q9H5I1 410 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 ADAM22Q9P0K1 906 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 OR1A2Q9Y585 309 aa23.77■■□□□ 1.4
CPSF1-202ENST00000527827 NOBOXO60393 691 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 HGFP14210 728 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 HTR1BP28222 390 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 PARP15Q460N3 678 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 GKN2Q86XP6 184 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 DNAAF5Q86Y56 855 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 UMODL1-AS1Q8N2C9 162 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 C3orf20Q8ND61 904 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 NCAPGQ9BPX3 1015 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 LRRN3Q9H3W5 708 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 NLRC4Q9NPP4 1024 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 FAM207AQ9NSI2 230 aaPredicted RBP23.76■■□□□ 1.39
CPSF1-202ENST00000527827 KLQ9UEF7 1012 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 DAAM1Q9Y4D1 1078 aa23.76■■□□□ 1.39
CPSF1-202ENST00000527827 SIGLEC16A6NMB1 481 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 TMX2-CTNND1H3BSU7 103 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 CCP110O43303 1012 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 CREB3O43889 395 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 BUB1BO60566 1050 aaPredicted RBP23.75■■□□□ 1.39
CPSF1-202ENST00000527827 CCKBRP32239 447 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 NSFP46459 744 aaKnown RBP23.75■■□□□ 1.39
CPSF1-202ENST00000527827 LIG3P49916 1009 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 INHBCP55103 352 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 TGIF1Q15583 401 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 EFHC2Q5JST6 749 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 SCYL2Q6P3W7 929 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 ZSWIM9Q86XI8 627 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 PHF13Q86YI8 300 aaPredicted RBP23.75■■□□□ 1.39
CPSF1-202ENST00000527827 GPR156Q8NFN8 814 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 RBM15Q96T37 977 aaKnown RBP eCLIP23.75■■□□□ 1.39
CPSF1-202ENST00000527827 STRADBQ9C0K7 418 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 VPS16Q9H269 839 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 PDFQ9HBH1 243 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 UBA2Q9UBT2 640 aaPredicted RBP23.75■■□□□ 1.39
CPSF1-202ENST00000527827 ACSL6Q9UKU0 697 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 FZD10Q9ULW2 581 aa23.75■■□□□ 1.39
CPSF1-202ENST00000527827 TCRBV5S1A1TA0A578 114 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 PRKCGP05129 697 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 PCCBP05166 539 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 MMP12P39900 470 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 CLEC16AQ2KHT3 1053 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 JAMLQ86YT9 394 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 EXD3Q8N9H8 876 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 PLA2G15Q8NCC3 412 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 OR6C4Q8NGE1 309 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 PDXPQ96GD0 296 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 WDR92Q96MX6 357 aa23.74■■□□□ 1.39
CPSF1-202ENST00000527827 J3KR12 359 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 TNFP01375 233 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 CALB1P05937 261 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 ZNF143P52747 638 aaPredicted RBP23.73■■□□□ 1.39
CPSF1-202ENST00000527827 SRSF6Q13247 344 aaKnown RBP23.73■■□□□ 1.39
CPSF1-202ENST00000527827 MTM1Q13496 603 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 GRM3Q14832 879 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 ERAP2Q6P179 960 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 BRAT1Q6PJG6 821 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 MON1BQ7L1V2 547 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 ATL2Q8NHH9 583 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 OR1E3Q8WZA6 343 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 ZNF641Q96N77 438 aaPredicted RBP23.73■■□□□ 1.39
CPSF1-202ENST00000527827 TMEM74Q96NL1 305 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 LRRC19Q9H756 370 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 CATSPERBQ9H7T0 1116 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 WDR70Q9NW82 654 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 DGKBQ9Y6T7 804 aa23.73■■□□□ 1.39
CPSF1-202ENST00000527827 ARHGEF17Q96PE2 2063 aaPredicted RBP23.72■■□□□ 1.39
CPSF1-202ENST00000527827 SLC28A2O43868 658 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 STAT1P42224 750 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 RGRP47804 291 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 KRT31Q15323 416 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 LINC00303Q3SY05 128 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 CT47A1Q5JQC4 288 aaPredicted RBP23.72■■□□□ 1.39
CPSF1-202ENST00000527827 OGFOD3Q6PK18 319 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 CAMK1DQ8IU85 385 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 CCNJLQ8IV13 435 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 SFTPA2Q8IWL1 248 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 PISDQ9UG56 409 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 APPL1Q9UKG1 709 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 SIK3Q9Y2K2 1263 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms