RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GKP32189 559 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 OPRD1P41143 372 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 EIF2DP41214 584 aaKnown RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 CCNHP51946 323 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 RPL26P61254 145 aaKnown RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 GRM3Q14832 879 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 CNGA3Q16281 694 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 QPCTQ16769 361 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PTPRNQ16849 979 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PREPLQ4J6C6 727 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 DPY19L3Q6ZPD9 716 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 Q6ZVU0 165 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 TAOK1Q7L7X3 1001 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PAF1Q8N7H5 531 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 NXPE3Q969Y0 559 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 BRD9Q9H8M2 597 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 IL1RAPL1Q9NZN1 696 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 SLC2A6Q9UGQ3 507 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 RPL26L1Q9UNX3 145 aaKnown RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 TTC34A8MYJ7 566 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PRRT4C9JH25 899 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 LDB2O43679 373 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PRKCGP05129 697 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PIRTP0C851 137 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 KCNA5P22460 613 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 HPDP32754 393 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 CCDC85BQ15834 202 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 KIAA0930Q6ICG6 404 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 EXOC3L1Q86VI1 746 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 TERB1Q8NA31 727 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 FRS2Q8WU20 508 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PEX13Q92968 403 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 UGT1A9O60656 530 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 FAM155BO75949 473 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 VAPBO95292 243 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 SLC8A1P32418 973 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 GRIA4P48058 902 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 SERPINB9P50453 376 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 CBX1P83916 185 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 MESP2Q0VG99 397 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 SMAD4Q13485 552 aaKnown RBP21.14■□□□□ 0.97
VPS28-208ENST00000527797 SKIV2LQ15477 1246 aaKnown RBP21.14■□□□□ 0.97
VPS28-208ENST00000527797 SMAD1Q15797 465 aaKnown RBP21.14■□□□□ 0.97
VPS28-208ENST00000527797 HSP90AA5PQ58FG0 334 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 PHTF2Q8N3S3 785 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 ARFGAP2Q8N6H7 521 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 OR2A12Q8NGT7 310 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 PIH1D2Q8WWB5 315 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 ZDHHC6Q9H6R6 413 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 UBE2ZQ9H832 354 aaPredicted RBP21.14■□□□□ 0.97
VPS28-208ENST00000527797 UGT1A7Q9HAW7 530 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 UGT1A10Q9HAW8 530 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 UGT1A8Q9HAW9 530 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 TXNDC16Q9P2K2 825 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 RIMKLBQ9ULI2 386 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 SPO11Q9Y5K1 396 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 DOCK8Q8NF50 2099 aa21.14■□□□□ 0.97
VPS28-208ENST00000527797 DENND4AQ7Z401 1863 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 KIF26AQ9ULI4 1882 aaPredicted RBP21.13■□□□□ 0.97
VPS28-208ENST00000527797 TBC1D3BA6NDS4 549 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 WASH3PC4AMC7 463 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 ARNTLO00327 626 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 KRT37O76014 449 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 KRT38O76015 456 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 ARCN1P48444 511 aaKnown RBP21.13■□□□□ 0.97
VPS28-208ENST00000527797 TAF1AQ15573 450 aaPredicted RBP21.13■□□□□ 0.97
VPS28-208ENST00000527797 TEDDM1Q5T9Z0 273 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 GLT6D1Q7Z4J2 308 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 TRABD2AQ86V40 505 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 KDM1BQ8NB78 822 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 CSGALNACT1Q8TDX6 532 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 UCMAQ8WVF2 138 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 ZNF641Q96N77 438 aaPredicted RBP21.13■□□□□ 0.97
VPS28-208ENST00000527797 SUV39H2Q9H5I1 410 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 IARS2Q9NSE4 1012 aaKnown RBP21.13■□□□□ 0.97
VPS28-208ENST00000527797 NSMCE4AQ9NXX6 385 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 HACD3Q9P035 362 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 SENP1Q9P0U3 644 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 KCTD3Q9Y597 815 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 ACTL7BQ9Y614 415 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 ARL5AQ9Y689 179 aa21.13■□□□□ 0.97
VPS28-208ENST00000527797 MBTPS2O43462 519 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 ABL2P42684 1182 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 GYS2P54840 703 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 PPP2R2AP63151 447 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 THOC5Q13769 683 aaKnown RBP21.12■□□□□ 0.97
VPS28-208ENST00000527797 PACS1Q6VY07 963 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 KDM7AQ6ZMT4 941 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 NUDT18Q6ZVK8 323 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 SRRM1Q8IYB3 904 aaKnown RBP21.12■□□□□ 0.97
VPS28-208ENST00000527797 CNPY4Q8N129 248 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 MDGA1Q8NFP4 955 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 OR13J1Q8NGT2 312 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 STYXQ8WUJ0 223 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 CPNE1Q99829 537 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 HEPHQ9BQS7 1158 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 SLC17A6Q9P2U8 582 aa21.12■□□□□ 0.97
VPS28-208ENST00000527797 C2orf81A6NN90 581 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 FOXO6A8MYZ6 492 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 KAT7O95251 611 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms