RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	TAF4	O00268	1085 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	TNPO2	O14787	897 aa	Known RBP	4.8	□□□□□ -1.64
CD44-223	ENST00000526553	KLK8	O60259	260 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GAGE7	O76087	117 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	MTA2	O94776	668 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GAGE12F	P0CL80	117 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GAGE12G	P0CL81	117 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GAGE12I	P0CL82	117 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	COX7A2	P14406	83 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	DAO	P14920	347 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	CD58	P19256	250 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GPT	P24298	496 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	RPP30	P78346	268 aa	Known RBP	4.8	□□□□□ -1.64
CD44-223	ENST00000526553	ECT2L	Q008S8	904 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GALNT2	Q10471	571 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GAGE1	Q13065	139 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	GAGE4	Q13068	117 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	TBX2	Q13207	712 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-223	ENST00000526553	VEPH1	Q14D04	833 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	C16orf82	Q7Z2V1	217 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	IL17RE	Q8NFR9	667 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	WASF1	Q92558	559 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	HVCN1	Q96D96	273 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	APOPT1	Q96IL0	206 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	C20orf141	Q9NUB4	165 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	OCIAD1	Q9NX40	245 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	PROCR	Q9UNN8	238 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	PCDHGB1	Q9Y5G3	927 aa		4.8	□□□□□ -1.64
CD44-223	ENST00000526553	IGLV5-37	A0A075B6J1	123 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	SRRM3	A6NNA2	597 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	PRR23D1	E9PI22	279 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	TSPAN4	O14817	238 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	TACC1	O75410	805 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	IGHV4-30-4	P0DP06	118 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	XBP1	P17861	261 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	EDN2	P20800	178 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	ARL1	P40616	181 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	EFNA5	P52803	228 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	UFM1	P61960	85 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	HIST2H2AC	Q16777	129 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	IZUMO4	Q1ZYL8	232 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	PRICKLE4	Q2TBC4	344 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	PPP6R3	Q5H9R7	873 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	FAM69B	Q5VUD6	431 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	JAKMIP3	Q5VZ66	844 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	TXNDC8	Q6A555	127 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	PRSS57	Q6UWY2	283 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	DLK2	Q6UY11	383 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	H1FNT	Q75WM6	255 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	ARMC9	Q7Z3E5	817 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	DCP1B	Q8IZD4	617 aa	Known RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	RBMXL3	Q8N7X1	1067 aa	Known RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	FBXL8	Q96CD0	374 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	SIN3A	Q96ST3	1273 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	LBHD1	Q9BQE6	289 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-223	ENST00000526553	NUF2	Q9BZD4	464 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	TERF2IP	Q9NYB0	399 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	MPP6	Q9NZW5	540 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	NFE2L3	Q9Y4A8	694 aa		4.79	□□□□□ -1.64
CD44-223	ENST00000526553	TEX13C	A0A0J9YWL9	993 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553		A0A1B0GVC2	190 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	CPED1	A4D0V7	1026 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	HSPA12A	O43301	675 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	ZBTB11	O95625	1053 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-223	ENST00000526553	MT-CYB	P00156	380 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-223	ENST00000526553	PYGL	P06737	847 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	IRF1	P10914	325 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	GGT5	P36269	586 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	GAS1	P54826	345 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	DHX34	Q14147	1143 aa	Known RBP	4.78	□□□□□ -1.64
CD44-223	ENST00000526553	KIF19	Q2TAC6	998 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	XKR9	Q5GH70	373 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	SCCPDH	Q8NBX0	429 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	SMRP1	Q8NCR6	262 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	NAXE	Q8NCW5	288 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	LMO3	Q8TAP4	145 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	ERGIC1	Q969X5	290 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	MPP4	Q96JB8	637 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	BBS4	Q96RK4	519 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	CISD1	Q9NZ45	108 aa	Known RBP	4.78	□□□□□ -1.64
CD44-223	ENST00000526553	CTNNAL1	Q9UBT7	734 aa		4.78	□□□□□ -1.64
CD44-223	ENST00000526553	CNTNAP2	Q9UHC6	1331 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553		A0A1B0GUV1	79 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	SLC16A5	O15375	505 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	MMP2	P08253	660 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	ETFA	P13804	333 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	AGA	P20933	346 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	PIGA	P37287	484 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	GABRB2	P47870	512 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	PEX5	P50542	639 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	RRP1	P56182	461 aa	Known RBP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	GRSF1	Q12849	480 aa	Known RBP eCLIP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	FOXD4	Q12950	439 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	GRIK3	Q13003	919 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	MYBPH	Q13203	477 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	ITGAD	Q13349	1161 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	RNPS1	Q15287	305 aa	Known RBP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	TCTN1	Q2MV58	587 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	LRRC8E	Q6NSJ5	796 aa		4.77	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms